Geospiza fortis (medium ground-finch): 102034699
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Entry
102034699 CDS
T03755
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102034699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102034699
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102034699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
102034699
NCBI-ProteinID:
XP_014165700
UniProt:
A0A6I9Z8L9
LinkDB
All DBs
Position
Un
AA seq
550 aa
AA seq
DB search
MAKKAPDDTTGKQEDGPISGHTESAHPLQDAPQESRPVNNEDREMAQHALPSGEDDEDDS
DSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTGRGYGASASAKLQPKGIDLDAAGNIN
GLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEETWKAYCEKQRRLQLGLDPAPPISTE
NKITVEEHSTHVLSISXXXXXXXXXKEVESNIIKTEFKTDFLALVGGRMKAGPPPNRKLG
GTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQPQQPSQPQQPPQQQ
PFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPIPGLFPPPLAPPPAL
LIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTVDKGTGSSSSSHWEH
WGSRRDRERERDRERDRERDRDRDRTPTTSEYNNDDERYRYYSRERSYDFERDYRRSRDR
SREREERHRERRHRDKDDGSKHKSSRRKQHESEEGESHRRHKHKKNKRSKEEKEASEDGA
QEGEEQDTKE
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaggcaccagatgacaccactggtaagcaagaagatggaccaatttctggg
cacacagagtctgctcaccctctgcaggacgctccccaggagagccggcccgtcaacaac
gaggacagagagatggcccagcacgcccttcccagtggtgaggatgatgaggatgacagt
gacagtgacagcgatgacgatgatgtgaaggtcacaattggcaacatcaaaacaggagca
ccgtcctacatgggaactcctatgaatctaaacttaaaaacgggtagaggctatggagca
tcagcttcagccaagttgcagcccaaaggtattgacttggatgccgcagggaatataaat
ggattgcctgtgatagaagtggatttggattcatttgaagacaaaccgtggaggaaacca
ggtgctgacctttctgattactttaattatggattcaatgaagaaacatggaaagcttat
tgtgaaaagcagcggcggcttcagctggggctggaccctgctcctcccatcagcacagag
aacaagatcacggtggaagagcacagcacccatgtgttatctatttccnnnnnnnnnnnn
nnnnnnnnnnnnnnaaaagaagtggaaagcaacatcatcaaaacagagttcaaaacagac
ttcttggctctggtgggaggacgaatgaaggctgggcctcctcccaacaggaagctgggt
gggaccattgatgtgatcgggggccaggcaggcacaatccgcagggtggaagggagacgc
cgggacaagcacgcctcggaggaaaaccccatccaggtgctgggagaccatggcagtaag
ccccagcccccccagcagccccagcagccctcccagccccagcagccacctcagcagcag
ccgtttgctccaccagcagggcctccgcctcccccgctggccgggcctcctcctccacac
ttcctgcaccctcctcctccagtgacttctgttccacctcccctgcatcctccaggcctg
ccacctccaggtccaattccagggctgttcccaccacctctggcaccaccaccagctctc
ctcatcccaaccttggatgggcagccagccagctacaacaacaggcagccacctcccttt
ggctacaactctgcagattcaggtttcatcagctacccccccatctccacgtcccacacg
ccctgggtgaccacggtggacaagggcacgggcagctccagcagcagccactgggagcac
tggggctccaggcgggaccgggagcgggagcgagaccgggagcgggacagggagcgagac
cgggaccgggaccgcacccccaccaccagtgaatacaacaatgacgacgagcggtaccgc
tactacagccgcgagcgcagctacgacttcgagcgcgattaccggcgcagccgcgaccgc
agccgcgagcgggaggagcggcaccgcgagcgccgccaccgcgacaaggacgacggcagc
aaacacaaatcctcccgcaggaagcagcacgagagcgaggagggcgagagccaccggcgc
cacaagcacaaaaagaacaagcggagcaaggaggagaaggaggccagcgaggacggggct
caggagggcgaggagcaggacaccaaggagtga
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