Geospiza fortis (medium ground-finch): 102034941 Help Entry 102034941         CDS       T03755                                  Symbol VPS39 Name (RefSeq) VPS39, HOPS complex subunit   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04140   Autophagy - animal gfr04142   Lysosome biogenesis gfr04145   Phagocytosis gfr04148   Efferocytosis gfr05132   Salmonella infection Brite KEGG Orthology (KO) [BR:gfr00001]  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     102034941 (VPS39)    04142 Lysosome biogenesis     102034941 (VPS39)    04140 Autophagy - animal     102034941 (VPS39)    04148 Efferocytosis     102034941 (VPS39)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     102034941 (VPS39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gfr04131]     102034941 (VPS39) Membrane trafficking [BR:gfr04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     102034941 (VPS39) SSDB OrthologParalogGFIT Motif Pfam:  Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin VPS18_solenoid_2nd LIF1_N DUF4145 SAM_CEP-1_C EcoR124_C Motif Other DBs NCBI-GeneID:  102034941 NCBI-ProteinID:  XP_014161872 UniProt:  A0A6I9Z7T3 LinkDB All DBs Position Un AA seq 835 aa AA seqDB search MSSESVCCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTI SKAKGASLFTCDLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMA WCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNE EGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG TNIIYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNL FAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEK AHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHT NVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANS PLKGHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSF LIENFKSLTIPYLEHIIHVWEETGADFHNCLIQLYCEKVQSLMKEYLSSFPADRAPVPAG EEGGDLGDYRKKLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVH ILKDTNMAENYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAA LQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLR VQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt atgtcatcagaaagtgtctgttgcaacaggtttgaagtgacactagagaaatccaacaag aacttctcaaagaagattcaacagatccacgttgtttctcaatttaaaattttggtcagt ctattagaaaataacatttacgtccatgacctgttgacatttcaacaaatcaccacaatt tcaaaggcaaaaggtgcatctctcttcacttgtgatctccagcaatcggatacaggggag gaggtgctgaggatgtgtgtggcagtgcgtaagaagctccagctttatttctggaaggac agggagttccatgagctccagggggacttcagtgtacctgatgtacccaagtctatggcc tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtagct cctgtagcagatggaaaagttgcagttggccaagatgatctaacagttgtgcttaatgaa gaaggggtctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcacctttgag ccccggctgctggtgcagagcatcgagctgcagaggccgcgcttcatcacctctggaggc acaaacattatatatgtggcaagtaatcactttgtttggagactcattccggtgtccata gccacacagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggca gaaatgaaagatgattcagatagcgagaagcgacaacaaatccaccacataaagaacctc tttgccttcaaccttttctgccagaagcgctttgatgaatccatgcaagtttttgccaag cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac aggaaacagctacagtatcccaaccccctgccggggctctctggggcagagctggagaag gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagctg aatgattctgatcatcagtccagtacctcacccctcatggaaggaacacccacgatcaaa tccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctgcataca aatgtagcactggtggcaccactgctacgtctggagaacaatcactgccatattgaggag agtgagcatgtactaaagaaggcacacaagtatagtgagctgataatactgtatgagaaa aaaggtctgcatgagaaagcattacaggtactggtggatcagtcgaagaaagccaactcc cctttgaagggtcatgagaggacagtgcaatatttgcagcatttgggcacagagaactta cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatggactgaag atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc ttgatagaaaattttaaaagcttgactattccttatctggaacacattattcatgtctgg gaagaaactggtgcagatttccacaactgtctgatccagctgtactgtgagaaagtgcag agcttaatgaaagaatatctcagttcttttcctgcagatagagctccagtgcctgctggg gaggaaggaggagacttgggggattaccggaagaagctgctgctttttctggagaagtcc agctgctatgaacctagtcgacttatcagtgacttcccctttgatggtctcctagaagaa cgtgctctgctcttgggtcgaatgggaaagcatgagcaagctctgtttatttatgttcat attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa gatggcaacaaagatgtgtatctgtccctgctgcgcatgtatctctccccacccagtgtt cattgcctgggacccatcaagatggaggtgctggagcctcaagccaatctgcaggctgct ctgcaggttttggaactgcaccacagcaaactggataccactaaggcaataaacctactt ccagcaaatacacagatcagtgagattcgcatcttcttagagaaagtacttgaagaaaat gctcagaagaaaagatttaatcaagtgctcaagaaccttctccatgcggagtttctgagg gtccaggaggagcggatcttgcatcagcaagtaaagtgcataattacagaggagaaggtg tgcactgtttgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata gttgtgcattatttctgctccaaagaagtcaacacactggacacctga

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