Geospiza fortis (medium ground-finch): 102035041
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Entry
102035041 CDS
T03755
Symbol
SF3B1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102035041 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gfr03041
]
102035041 (SF3B1)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102035041 (SF3B1)
Spliceosome [BR:
gfr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102035041 (SF3B1)
Complex B
102035041 (SF3B1)
Complex C
U2 SnRNP specific factors
102035041 (SF3B1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102035041 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
102035041
NCBI-ProteinID:
XP_014162280
LinkDB
All DBs
Position
Un
AA seq
1315 aa
AA seq
DB search
MNDTFTLFMKYNCFKDNVGGQGLDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGG
SDSRFAGYVTSIAATELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEH
RPQKIADREDEYKKHRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEERE
IRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTP
SLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSAR
KNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGS
TPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKP
DDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacacctttaccctcttcatgaaatataactgttttaaagataatgttggagga
caaggccttgatattgaagcacagattcgagaaattcaaggaaaaaagcctgctcttgat
gaagcacaaggagtaggccttgattccacaggatattatgatcaagaaatttatggtggc
agtgacagcagatttgctggatatgtcacttctattgcagctactgaattggaagatgat
gatgatgactacccttccacaagtctgcttggccagaagaagccaggataccatgctcca
gtggcattgcttaatgacataccacaatctactgaacagtatgatccttttgcagaacac
cgtcctcaaaagattgcagatcgggaagatgagtacaaaaagcacaggcggatgatgata
atttcccctgagcgtcttgatccttttgcagatggagggaagactccagaccctaaaatg
aatgccagaacatacatggatgttatgcgtgaacagcatttaacaaaagaagagagggaa
attaggcaacaactagctgaaaaagctaaagctggagagcttaaagtcgtcaatggagcc
gcttctcagccaccttcaaaacgcaaacggcgttgggatcagacagctgatcagactcct
ggtgctacacctaagaaattgtccagttgggatcaagcagagactcctgggcacacccca
tctctgcgatgggatgaaaccccaggccgtgcaaagggaagcgaaactccaggtgccacc
ccaggctccaagatctgggatccaactcccagccataccccagcaggagctgcaacgccc
ggccgggacacacctgggcacgcaacgccgggccatggaggggccacttccagtgcgcgc
aaaaatcgatgggacgaaacccccaaaacagaaagagatactccgggccatggcagtggc
tgggctgagacacctcgtacagacagaggtggtgactccattggtgagacaccgacccca
ggagcgagcaaaaggaagtcccgctgggatgaaacacctgcgagccagatgggtggcagc
actcctgttctgacacctggcaaaacacccattggaaccccagctatgaacatggcaacc
cctacaccaggtcacatcatgagcatgactcctgaacagctgcaggcttggcgctgggag
agggaaattgatgagagaaacagaccgctttctgatgaggaattggatgctatgtttcct
gaaggatataaggttctcccacccccagctggttacgtgcccatccgtacccctgctcgg
aagctcacagcgactcccacgcccctggggggtatgacagggttccacatgcagacagag
gaccgcaccatgaagagtgtgaatgaccagccatcgggcaacctgccattcctgaaacca
gatgatatccagtacttcgacaagctgctggttgatgttgatgaatcgactctgagtcct
gaggaacagaaggagagaaaaataatgaaattacttctgaaaataaagaatggcacacct
cccatgcgaaaggctgcgttgcggcaaattaccgataaagctcgggaatttggagcaggg
ccgctgttcaatcagatcctgcctctgctgatgtcaccaacactcgaagatcaggagcgg
cacttacttgtcaaagtcatcgacagaattctatacaaattggatgacttggtccgacca
tatgtacacaagatccttgtcgtcattgaaccactgctgattgatgaagactactatgct
agagtggaaggcagagaaattatttcaaacttggctaaggctgcaggtttggcaacaatg
atctccacaatgcgacctgatatcgataacatggatgagtatgtcagaaatacaacagct
cgagcctttgctgttgttgcatctgctctgggcattccttctctgttacccttcctgaaa
gctgtctgtaaaagcaaaaaatcctggcaggccaggcacactggcatcaagattgtacag
cagattgctattcttatgggttgtgctatcctgcctcatctcaggagcttggttgaaatt
attgagcatgggctggtggatgagcagcagaaggttcgcaccatcagtgctttggccatt
gctgctttggccgaggcagccactccctatggtattgagtcctttgactctgtcctgaag
cccttgtggaagggtatacgtcaacacagaggaaagggtttggccgcattcttgaaggcg
attggttacctgatcccactcatggatgctgagtatgcaaactactacaccagagaagtc
atgctgattcttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttg
aaggtggtaaagcagtgttgtggtacagatggtgttgaagcaaactacattaaaacagaa
atcttgccacccttcttcaaacatttctggcagcacagaatggcactggacagaagaaat
tacagacagttggttgatacaactgtggagctggcaaataaagttggagcagcagaaatt
atttctagaattgtggatgatctgaaagatgaggctgagcagtacagaaagatggtcatg
gaaacaattgagaagataatgggaaatctgggagcagcagacattgatcacaaactggaa
gaacagctcatagatggtattttgtacgccttccaggaacagacaacagaggattctgtg
atgctgaatggttttggcacagtggttaatgctctaggcaaaagggtgaaaccctacttg
ccacagatctgtggtacagttttgtggcgtttgaacaacaaatcagccaaagtcaggcag
caggctgctgacctgatctctcgtactgcagttgtcatgaagacttgtcaagaggaaaaa
ctgatgggacacttgggtgttgttttgtatgagtacctgggtgaagaatatcctgaagta
ctgggcagcatacttggagcgcttaaggccattgtgaatgttataggtatgcacaagatg
acgccaccaatcaaagacctgctgccacggttgacacctattttgaagaacagacatgag
aaagtacaggaaaattgtattgatcttgttgggcgtattgcagacagaggtgcagagtat
gtttctgcaagagaatggatgaggatctgctttgagctgcttgagttattaaaagctcac
aagaaagctatcagaagagccacagtgaacacttttggttatattgcaaaagctattgga
cctcacgatgtattggccacactgctgaacaacttgaaagtacaggaaaggcagaacaga
gtatgtactacagtagcaattgctattgtggctgaaacatgctcacctttcacagtgctg
cctgcgctcatgaatgaatacagagttccagaactgaatgtccagaatggtgtgttaaaa
tctctttctttcctttttgaatacattggagagatgggaaaagattacatttatgctgtt
acaccattgcttgaagatgctctaatggacagggatctggtacacagacaaacagccagt
gctgtggtgcagcacatgtcccttggtgtttatgggtttggctgtgaagattctcttaat
cacttgttaaattatgtgtggcccaacgtgtttgaaacctctcctcacgtcatccaggca
gttatgggcgctctggagggcctcagagtggcgattgggccctgcaggatgttacagtac
tgcttacagggtttgtttcaccctgccagaaaagtcagagatgtttattggaagatctac
aattcaatctacatcggctcacaggatgctctgatagcacattatccaagaatctataat
gatgaaaagaacacctatattcgttatgaacttgattacatcttataa
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integrated database retrieval system
