Geospiza fortis (medium ground-finch): 102035390
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Entry
102035390 CDS
T03755
Symbol
ERCC8
Name
(RefSeq) ERCC excision repair 8, CSA ubiquitin ligase complex subunit
KO
K10570
DNA excision repair protein ERCC-8
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03420
Nucleotide excision repair
gfr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102035390 (ERCC8)
09124 Replication and repair
03420 Nucleotide excision repair
102035390 (ERCC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102035390 (ERCC8)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102035390 (ERCC8)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
102035390 (ERCC8)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102035390 (ERCC8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
WD_LRWD1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
WD40_RFWD3
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
eIF2A
Beta-prop_LRRK2
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
102035390
NCBI-ProteinID:
XP_014162894
UniProt:
A0A6I9ZA00
LinkDB
All DBs
Position
Un
AA seq
341 aa
AA seq
DB search
MLSGGSDGVIVLYDLENLSRKPSYTCKALFSVGRSHPDVHKFSVETVQWYPHDTGMFTSS
SFDKTLKIWDTNVLQPADIFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSS
SHILQGHRQEVLAVSWSPRHEYVLATGSADGKVKLWDVRRASGCLSTLDQYNGEKSKASS
EAANTAHNGRVNGLCYTNDGLHLLTVGTDDRMRLWNSSTGENTLVNYGKVCNESRKGLKF
AISCGCNPEFAFVPYGSTIAVYTVFTGELITMLRGHYSTVNCCVFQPHFQELYSGSKDCN
ILAWIPAPRDPIPDDTSEKSLPQQHVNPAYEDTWSSSDDEG
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgttatctggtggatcagatggtgttattgtactttatgaccttgaaaacttgagcagg
aagccaagttacacgtgtaaagcacttttttcagttggaaggagtcatcctgatgtacat
aaattcagtgtggagacagtccagtggtatcctcatgacaccggcatgtttacatcgagc
tcatttgataaaaccttgaaaatatgggatacaaacgttttacaacctgcagatatattt
cattttgagggaacagtctatagccatcatatgtctccaattgctacaaagcactgttta
atagcagttggtaccaaaagccccaaagtacagctctgtgacttgaagtctggatccagt
tctcacattctgcagggtcacagacaagaagtattggcggtgtcttggtccccacgtcat
gaatatgttttggcaacaggaagtgctgatggtaaagtaaaattatgggatgtgaggaga
gcttctggatgtctgagtacacttgatcagtacaatggagaaaagtccaaagcatcttct
gaggcagcaaacactgctcacaatgggagagttaatggtttatgctatacaaatgatgga
cttcacctgctaaccgttggtacagatgatcggatgcgactctggaatagctccactggg
gaaaacaccttagtaaactatgggaaggtctgtaatgaaagtaggaaaggactcaaattt
gccatctcttgtggctgtaatccagagtttgcctttgttccgtatggaagtaccattgct
gtttatacagttttcacaggagaactgataactatgcttagagggcactatagtactgtc
aactgctgtgtatttcaacctcattttcaggaactttatagtggtagcaaagactgcaat
atccttgcatggataccagctccacgagatccaattcctgatgatacttctgaaaagtct
ctgcctcaacaacatgtaaatccagcatatgaagacacatggagcagcagtgatgatgaa
ggctga
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