Geospiza fortis (medium ground-finch): 102035530
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Entry
102035530 CDS
T03755
Symbol
IGHMBP2
Name
(RefSeq) immunoglobulin mu binding protein 2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gfr03009
]
102035530 (IGHMBP2)
03012 Translation factors [BR:
gfr03012
]
102035530 (IGHMBP2)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102035530 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
102035530 (IGHMBP2)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Other ribosome biogenesis factors
102035530 (IGHMBP2)
Translation factors [BR:
gfr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102035530 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
Helicase_RecD
ResIII
nSTAND3
DEAD
AAA_22
AAA_16
Flavi_DEAD
UvrD-helicase
SLFN-g3_helicase
AAA_25
IstB_IS21
ABC_tran
AAA
T2SSE
DAP3
DnaB_C
Glyco_transf_21
NTPase_1
PhoH
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
102035530
NCBI-ProteinID:
XP_005426627
UniProt:
A0A6I9HQP3
LinkDB
All DBs
Position
Un
AA seq
990 aa
AA seq
DB search
MLGKTRIPSTSGKSSRAHPAELAQSRAWQESVSLKELQRRGVCLLKLQLSSQRTGLYGRL
LVTFQPRKRDSDAELPSNSFGPGDIVGLYESAGQGDPLCTGVVTRVTPKAVTVALEEARD
GELALDHERSFRLLKLANDVTYNRLKRALTALKQYRGGPASDLIDVLFFASAPRAFPETK
PLEFFNACLDESQREAVSFSLAQRELAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAP
SNVAVDNLVERLAGCRARLXXXXXXXXXLRPIQQHCLDAVLARGDTAHIVADIRRDIDHA
WAKTKKAQDKGERSHFLGEIKTLRKELKEREEAAMAAALSQATVVLATNTGASSDGPLKL
LPETHFDLVVIDECAQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLM
ERLAGHYGEQAVRMLTVQYRMHLLIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSDTEE
TSIPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLVGMHVQALVDAGVKAKDIAVVAPYNL
QVDMLRQHLCHSHPELEIKSVDGFQGREKEAVILSFVRSNKKGEVGFLAEERRINVAVTR
ARRQVAVVCDSHTVGSRPFLQRLLDHLTQHGLVRSAFEYLDDLVPQNYPGEGQAQRQQGP
KAPGPKARPAPAGKLKAAAAGAGSQKPGARSSPSAATAGRESSGSKEGGDRFRAMLEAFL
ASSEAQLDFPTSLNSHERMLVHVLAEEYGLQHLSSGEGRDRYISVRKRVPKQPPLPSEPP
LPEPPLPPEPLPKPPLPSEPLPEPQHPHGNTPDPAEPKESSKSSGKVDLKSLHLERVQRE
KARREEAARKVQEPRSDRRKKDKSEAKGKPVIGSADGEDFDALISAAMEADRTCAFPRCK
ASVTTLGQLCHHCQRLFCLSHHIPEVHGCGDKAKVQARQRISREGILYPGSGSKDKSLDP
ARRAHLQRRLDQKLSELTSQRKGKKKDKEK
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgctgggaaagacccggatcccttccacctctgggaagagctccagggcccatcctgcc
gagctggcccagagcagggcatggcaggagagcgtctccctgaaggaattgcagcggagg
ggtgtctgcttgctcaagctccagctcagcagccagagaaccggcctctacgggcgtctc
ctcgtgacattccagcccaggaagcgggactcggacgccgagctgccctccaacagcttt
gggcctggggacatcgtggggctctatgagtcagctgggcagggggacccgctgtgcacg
ggtgtggtgacacgtgtcacccccaaggcagtgacggtggccctggaggaggcccgggat
ggggagctggccctggaccacgagcgctccttccgcctgctcaagctggccaatgatgtc
acctacaacaggctcaaaagagctctaactgcactcaagcagtaccggggtggcccagcc
tccgacctgatcgacgtcctcttctttgcctctgctcccagggcattccctgaaacaaag
cctctggagttcttcaatgcttgcctggatgagtctcagagggaagctgtgtccttctcc
ctggctcagagggagctggccatcatccacgggcctccaggcacagggaaaaccacgacc
ctggtggagatcatcctgcaggctgtgcagcagggcctgaaggtgctgtgctgtgccccg
tccaacgtggccgtggataacctggtggagcggctggcgggctgcagggcgcggctnnnn
nnnnnnnnnnnnnnnnnnnnnngcctccgccccatccagcagcactgcctggacgccgtg
ctggcccgaggggacaccgcccacatcgtggcggacatcaggagggacatcgaccacgcc
tgggcaaaaaccaaaaaggcccaagacaagggagagagaagccattttctgggtgagatc
aagaccctgaggaaggagctgaaggagagagaagaggctgccatggctgcagccctcagc
caggccaccgttgtccttgccaccaacacaggtgcttcctcagacggccccctgaagctg
ctccctgaaacccactttgacctggtggtgattgatgagtgtgcccaggctctggaagcc
agctgctggatccctctgctgaaagctcccaagtgcatcctggctggggatcacaagcag
ctgccccccaccatcatctcccacagggccgcggccgaggggctgtcgctgagcctgatg
gagcggctggcggggcactacggggagcaggcggtgcggatgctgacggtgcagtaccgc
atgcacctgctcatcatggaatgggcgtcctcggagctctacggcggccggctcagcgca
cacccctccgtggcacagcacctgcttagggacctgccgggtgtctctgacacagaagag
accagcattcctttgttgctcatcgacaccgctggctgtggcctgtttgagctggaagtg
gaggatgaacagtccaaggggaatccaggggaggtccagctggtggggatgcacgtccag
gccttggtggatgctggtgtgaaggccaaggacatcgctgtggtggccccctacaacctc
caggtggacatgctcagacagcacctttgccacagccaccccgagctggaaatcaaatca
gtggatggtttccagggcagggagaaggaggcagtgatcctgtcctttgtcagatccaac
aagaaaggtgaggtgggcttcctggccgaggagcggcgcatcaacgtggcggtgacacgg
gcgcggcgccaggtggccgtggtgtgtgacagccacaccgtgggcagccgccccttcctg
cagcgcctgctggaccacctgacccagcacggcctcgtgcgctctgccttcgagtacctg
gatgacctcgtgccccaaaactaccccggggagggccaggcccagcgccagcagggcccc
aaagcaccgggccccaaagcacggccggctccggctgggaagctcaaggcggcggcggct
ggagcagggagccagaaaccaggagcacggagctccccgagcgctgccacagctgggagg
gaaagctcagggtcaaaggagggtggggacaggttcagggccatgctggaggccttcctg
gcgagcagcgaggcacagctggatttcccaacatccctgaattcccacgagcggatgctg
gtccacgtgctggcagaggagtacgggctgcagcacctgagctctggggagggccgggac
aggtacatcagtgtccgcaagagagtccccaagcagccccctctgccctctgagcccccc
cttcctgagcccccactgccccccgagccccttcccaagcccccactgccctccgagccc
cttcccgaaccccagcatccccacgggaacacccctgaccctgcggagccaaaggaaagc
agcaagagctcggggaaagtggatctgaaatccctgcacctggagagagtccagagggag
aaagccaggcgggaggaggcggccaggaaggtgcaggagcccaggagtgacagaagaaaa
aaggacaaaagtgaagccaaaggaaagccggtgatcgggagcgcggacggagaggatttc
gatgctctgatctccgctgccatggaagctgacaggacctgtgctttcccccgctgcaag
gcctctgtcaccaccctgggccagctctgccaccactgccagcggctcttctgcctcagc
caccacatccccgaggtgcacggctgtggggacaaggccaaggtgcaggcccggcagcgg
atcagccgggaggggatcctgtaccctggcagcggctccaaggacaaatccctggatccc
gccaggcgagcccacctccagcgccgcctggaccagaagctcagcgagctgacgagccag
aggaagggcaaaaagaaagacaaggagaaatga
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