Geospiza fortis (medium ground-finch): 102035540
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Entry
102035540 CDS
T03755
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gfr03009
]
102035540
03036 Chromosome and associated proteins [BR:
gfr03036
]
102035540
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102035540
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102035540
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102035540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102035540
NCBI-ProteinID:
XP_005429044
UniProt:
A0A6I9HTV6
LinkDB
All DBs
Position
Un
AA seq
576 aa
AA seq
DB search
MFFKELTEEAKEGAFSNFPLSQNTINLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTG
TGKTLSFALPLIEKLQSVSQDGRRGRAPKVLVLVPTRELAIQVAKDFKNFTKKLSIACFY
GGAPYKEQLDVLKSGIDILVGTPGRIKDHVQNSKLELSSVKHVVLDEVDHMLDMGFAEQV
EEILGSSYKKGSENNPQTLLFSATCPRWVYDVAKKYMRAEYEQIDLVGKKTQRTATTVEH
LAIQCRSSQRAGVLGDIIQVYSGTHGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQ
KQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGR
TGICICLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPSAVDY
FRKSAEELIDEKGAVAALAAALAHISGAAHIQQRSLLNSTAGFVTMVLKCSIEMHSMGYA
WRGLKEQLGEEVDNKVSAMRFLKGKMGVCFDIPVDELSSIQEQWRDTRRWQLSVASELPE
LEEYPQEAARGFSRFGNSRQGDFKRNSWFKSGNRGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgttcttcaaggagctgacagaagaagcaaaagaaggcgccttctctaattttcctctc
tcacaaaacactatcaaccttctcacagctcgaggtataaaatacctgttccctgtgcaa
gtgaagactttccagcccatatatgatggcaaagatgtaattgctcaagctcggacagga
actgggaaaaccctttcctttgcccttccactgattgaaaaactccagagtgtctcacag
gatgggagaagaggccgtgcaccaaaggtgctggttcttgttccaaccagggaactggcc
attcaggtagccaaagacttcaagaatttcacaaagaaactgtcaattgcttgtttttat
ggaggagctccatacaaagaacagctcgatgtccttaaaagtggcatcgatattctggtg
ggaactcctggcaggatcaaagaccacgttcagaacagcaagctggaactttccagtgtg
aagcacgttgttttggatgaggtggatcatatgttggacatgggctttgctgaacaagtg
gaagagatcttgggatcatcctataagaaaggctccgagaacaacccgcagacgctgctc
ttttctgcaacttgcccacgatgggtttatgatgtagcaaaaaaatacatgagagctgag
tatgaacagattgacctggttgggaagaagactcaaaggacagccacaactgtggaacac
ttggccatacagtgccgctcatctcagagggcaggagttcttggggacatcatccaggtc
tacagtggcacccatgggaggaccattgtcttctgtgagaccaaaaaggaagcaaatgag
ttggccatgaatgcttctctcaaacaggatgcccagtccttgcatggtgacattccacag
aaacagagagaaatcacattaaaaggcttcagaaacggtgtgtttgaagtgctgattgca
acaaatgtagctgcccgtggtttggatattcctgaggttgaccttgttatacagtgctca
ccaccaaaagatgtggattcgtacatccatcgctctgggcgcacaggccgagcgggccgg
accggcatctgcatttgcttgtttcagagaagagaagaagatctgctgaaacaagtcgag
cacaaagcgggtattacctttaagcgtgtaggcgttccctctgctacagatgtaattaaa
gcttcaagtagtgatgccaaaaagttgctggaggctgttcctccctctgcagtggactac
ttcagaaaatcagctgaagagctgatagatgagaagggggcagtggctgccctggctgca
gccctggcacacatttctggggcagctcacatccagcagcgctccctgctcaactcgaca
gctggctttgtgaccatggtgttgaagtgctcaatagagatgcacagcatgggctatgcc
tggcgggggctgaaggagcagcttggcgaggaggttgataacaaagtgtctgccatgcgt
ttcctcaagggcaagatgggcgtgtgctttgatatcccagttgatgagctgagtagtata
caggagcagtggagggacacgcggcgctggcagctctcggtggccagcgagctgcctgag
ctggaggaatatccccaggaggcagcacgaggcttctccaggttcgggaacagcaggcaa
ggagacttcaagagaaacagctggttcaagagtggaaatcggggactttaa
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