Geospiza fortis (medium ground-finch): 102035599 Help Entry 102035599         CDS       T03755                                  Symbol UPF1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr03013   Nucleocytoplasmic transport gfr03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:gfr00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     102035599 (UPF1)    03015 mRNA surveillance pathway     102035599 (UPF1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:gfr03019]     102035599 (UPF1) Enzymes [BR:gfr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      102035599 (UPF1)     5.6.2.5  RNA 5'-3' helicase      102035599 (UPF1) Messenger RNA biogenesis [BR:gfr03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      102035599 (UPF1)    mRNA cycle factors     Common to processing body (P body) and stress granule      102035599 (UPF1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase NPHP3_N ATPase nSTAND3 NAT10_TcmA_helicase DEAD UvrD-helicase SRP54 AAA_16 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  102035599 NCBI-ProteinID:  XP_005430701 UniProt:  A0A6I9HVC6 LinkDB All DBs Position Un AA seq 1047 aa AA seqDB search MEQILVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDP ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNV FLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQ LRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVK LEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLA PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFA VDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQ GPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREA IDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNAD VICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVM CKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRV KKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIG IITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIG FLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLM QFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISA GPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKAGRGGRQKNRFGIPGTS QSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI DVALSQDSTYQGERAYQHGGVTGLSQY NT seq 3144 nt NT seq  +upstreamnt  +downstreamnt atggagcagatcctggtgaacggtcccgatgggatcctgcagaacggagctgtggatgag aacgtggccaagaccagccagctcctggcagagctcaacttcgaggaggatgaggaggac acctactacaccaaggatctgcctgtgcacgcctgcagctactgtgggatccacgaccct gcctgtgtggtttactgcaacaccagcaagaaatggttctgcaacggccgtggaaacacc tctggcagccacattgtgaaccacctggtgagagccaagtgcaaggaggtgaccctgcac aaggacgggcccctgggagagaccgtcctggagtgctacaactgcggctgccgcaacgtc ttcctgctgggcttcatcccagccaaggctgactccgtggtggttctgctctgcaggcag ccctgtgccagccagagcagcttgaaggacatcaactgggacagctcgcagtggcagccc ctgatccaggaccgctgcttcctctcgtggctggtgaagatcccctcggagcaggagcag ctccgcgcccgccagatcaccgcccagcagatcaacaagctggaggagctctggaaggaa aatccatctgcaaccctcgaggacttggaaaaacctggtgttgatgaggaaccccagcat gtcctgcttagatatgaagatgcttatcaataccaaaatatatttggtcctctggtcaag cttgaggcagattatgacaagaaactcaaggaatctcagacccaagataacatcacagtc aggtgggacctgggcttgaacaagaagagaattgcttatttcactttgccaaagactgat tcagacatgcgcctcatgcagggagatgagatctgcctgaggtacaagggagacctggcc cccctgtggaaaggaattgggcatgtgatcaaagttcctgataattatggtgatgagatc gccatcgagctgaggagcagcgtgggagctcccgtggaggtcacccacaacttccaggtg gattttgtgtggaaatccacttcctttgacaggatgcagagtgctctgaaaacgtttgca gtggacgagacctcggtgtctgggtacatttaccacaaactgctgggccatgaggtggaa gatgtcatcatcaaatgccagctgccaaaacgcttcacagcccagggactccctgatctc aaccactctcaggtttatgctgtcaagactgtcctgcagcgtcctctgagccttatccag ggaccccctggcactgggaaaacagtgacatcagccaccatcgtgtatcacctggccagg cagggcaatgggcctgtgctggtgtgtgcccccagcaacatcgctgtggatcagctgacg gagaagatccaccagactggcctcaaggtggttcgtctgtgtgccaagagccgcgaggcc atcgactcccccgtgtccttcctggccctgcacaaccagatcaggaacatggacagcatg ccagagcttcagaagctgcagcagctcaaggatgagactggagaactttcctctgctgat gagaagcgttaccgggcgctgaaacgcacggcggagcgggagctgctcatgaacgctgat gtgatctgctgcacgtgtgtgggagctggggaccccaggctggccaagatgcagttccgc tccatcctcatcgacgagagcacgcaggccaccgagcccgagtgcatggtgcccgtggtg ctgggggcaaagcagctgatcctggtgggtgaccactgccagctggggcctgtggtgatg tgcaagaaggcagccaaggctgggctgtcgcagtcgctgtttgagaggctggtggtgctg ggcatccggcccatccggctgcaggtgcagtaccgcatgcaccccgcgctcagcgccttc ccctccaacatcttctacgagggatccctgcagaacggcgtcactgcagctgacagggtg aagaaaggctttgatttccagtggccccagcctgacaaacccatgttcttctacgtgacc cagggccaggaggagattgccagctcgggcacctcttacctgaacaggaccgaggctgcc aacgtggagaagatcaccacgaagctgctcaaggctggggccaagcctgaccagatcggc atcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggc tccctgcacaccaagctctaccaggaagtggaaattgccagtgtggacgccttccagggc agggagaaggatttcatcatcctgtcgtgtgtgagggccaacgagcaccagggcatcggc ttcctcaacgaccccaggcggctgaacgtggccctgacccgagccaggtacggggtgatc attgtggggaaccccaaggccctgtccaagcagcccctctggaatcacctgctgaattac tacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgcgagagcctgatg cagttcagcaaaccccgcaagctcgtcaacaccatcaaccctggtgcccgtttcatgacc actgccatgtatgatgcacgcgaggccatcatccctggctctgtctacgaccgcagcagc caaggccgtccatccaacatgtacttccagacccacgaccagattgggatgatcagtgct ggccccagccacgtcactgccatgaacattcccatccccttcaacctcgtcatgccgccc atgccgcccccgggctacttcggccaggccaacggccccgctgcaggccgtggggctccc aaagggaaggcgggccgtggcgggcggcagaaaaaccgctttgggattcctggcacgagc cagtccaacctgcccaacagccaggccagccaggacgtggtgtcccagcccttctcgcag ggccccctgacccagggctacatctccatgagccagccctcccagatgagtcagcctggg ctctcccagccggaattatcccaggacagttaccttggtgatgagtttaaatcccagatt gacgtggcgctgtcacaggactcaacttaccagggggaacgagcttatcaacatggtgga gtgacgggactgtcacagtattag

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