Geospiza fortis (medium ground-finch): 102035712
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Entry
102035712 CDS
T03755
Symbol
DDX21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gfr03009
]
102035712 (DDX21)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102035712 (DDX21)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102035712 (DDX21)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102035712 (DDX21)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102035712 (DDX21)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
ERCC3_RAD25_C
FMP27-BLTP2_C
Motif
Other DBs
NCBI-GeneID:
102035712
NCBI-ProteinID:
XP_014165811
LinkDB
All DBs
Position
Un
AA seq
687 aa
AA seq
DB search
MKRWWQEPAAEEKKEKKSKRRDKFQRGKTQTDDSEESDEERYAPKPKKSKSVSKQNGHTK
EESLEKSRLSSFSSKSSRRSRQSSSSETSSESESESEQDQLTGEQKEGAFSNFSISKETV
QLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKLQGDSQERRRG
RPPKVLVLCPTRELANQVAKDFKDITRKLTVGCFYGGTPYNGQIDLMRSGIDILVGTPGR
IKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATC
PHWVYDVAKKYMKSRYEQIDLIGKRTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSH
GRTIVFCETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGSFKVLVATNVAA
RGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEYQLRHVEQKAGI
TFKRVGVPTATDIIKASSKDAMRCLDSVPQTAIEYFKESAQLLIKEKGPVNALAAALAHI
SGATSIEQRSLLNSDVGFVTMILRCSEEISNMSYAWRRLREVLGDDIDRKVNRMCFLKGK
MGVCFDVPVADQKDIEARWEDSKHWRLCVATELPELVESARGGGGGGSGGGNGRSFSSSR
NGRRGGSGRNRFRSRGQKRSFSRAFEH
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctggtggcaggagccagcagctgaggagaaaaaggagaagaaatctaaacgc
cgggacaagtttcagaggggaaagactcagacagatgacagcgaggaatcggatgaggag
cgttatgccccgaaacccaagaaatcaaagagtgtcagtaaacagaacggtcacacgaaa
gaggagagcctggagaaatcgcgattgtcctcctttagcagcaaatcctcccgcagaagc
cggcagagtagttccagtgaaacgtcaagtgagagcgaaagtgagagcgagcaggaccag
ttgactggagaacagaaggagggtgctttctccaatttttctatttccaaagaaactgtc
cagcttcttcaagctcgaggagtgacgtacctgttccctgtgcaagtgaagaccttcaac
cccgtgtattctggcaaggatgtcattgctcaggcacgaactggaacagggaaaacattc
tcttttgccattcccttaattgaaaagcttcagggagactcacaggaaagaagaagaggc
cgtccaccaaaggttctagttctttgtccaacaagagagctggcaaatcaggttgccaaa
gatttcaaggatatcacaaggaagctgacagtcggttgtttttatggaggaactccctat
aatggacaaattgacctcatgagaagtggcattgacattttggtggggacccctggtcgg
atcaaggaccacctgcagaatggcaagctggaccttaccaaggtcaaacacgttgtgctg
gatgaagttgaccagatgctggacatgggatttgctgagcaagtggaagacattttacga
gttgcatacaaaaaggattctgaagacaatccccagactctgctgttctctgccacttgc
ccacactgggtatatgatgtggctaagaaatacatgaagtccagatatgaacagattgac
cttattgggaaaagaactcagaaggctgctacaacagtagaacatttggcaatagagtgt
cactggtctcagagagctgcagttattggagatgtcattcaggtctacagtggcagccat
gggaggaccattgtcttctgtgagaccaaaaaggaagcaaatgaactggctctgaatgct
tcaatcaaacaggattgccagtcgttgcatggtgacattcctcagaagcagagagagatc
acactgaagggttttaggaatggttcatttaaagttctggttgcaaccaatgtagctgcc
cgtggtttagatatcccagaagttgacctggttgtacaaagctcaccaccaaaggatgtg
gagtcctacatccatcgctccgggcgcacgggccgagctgggcgcactgggatctgtatc
tgcttttatcagcgcaaggaggagtaccagctgagacacgtggagcaaaaagcgggcatt
acattcaagcgtgttggtgttcctactgcaacagacataataaaggcttccagcaaagat
gccatgaggtgcctggattctgttcctcagactgctattgagtatttcaaagaatctgct
cagttgctaataaaagagaagggaccagttaatgctctggctgcagctctggcccatatt
tcgggtgctacttccattgagcagcgctcactgctgaactcggatgtgggatttgttaca
atgatactacgctgctctgaagaaataagcaacatgagctatgcctggcgaaggctgcga
gaagtgctgggtgatgatattgatcggaaggtgaacaggatgtgtttcctcaagggaaaa
atgggtgtgtgctttgatgttcctgtggcagaccaaaaggacatagaggcaaggtgggaa
gattcaaagcactggcgtttgtgtgtggccactgaattaccagagttggtcgagtctgca
cgaggaggaggaggaggagggagtggcggagggaatggccgaagcttctccagctccagg
aacggtcggcgtggtggctctggtagaaacaggtttaggagcagaggccagaaacgaagt
ttcagcagagcatttgaacattaa
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