Geospiza fortis (medium ground-finch): 102035923
Help
Entry
102035923 CDS
T03755
Symbol
BLM
Name
(RefSeq) Bloom syndrome RecQ like helicase
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03440
Homologous recombination
gfr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102035923 (BLM)
03460 Fanconi anemia pathway
102035923 (BLM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfr03032
]
102035923 (BLM)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102035923 (BLM)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102035923 (BLM)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
102035923 (BLM)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
102035923 (BLM)
Bloom's syndrome complex (BTR)
102035923 (BLM)
FA (Fanconi anemia) pathway
102035923 (BLM)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ_Zn_bind
Helicase_C
BDHCT
HRDC
RQC
BDHCT_assoc
ResIII
Motif
Other DBs
NCBI-GeneID:
102035923
NCBI-ProteinID:
XP_014163815
UniProt:
A0A6I9Z6T8
LinkDB
All DBs
Position
Un
AA seq
1050 aa
AA seq
DB search
MEAICELVDAIPLQELQALGCARALLQHRDLRRKLLANSVSLNQNGINTTVPRSWKAPME
QGPRVCPGAGPGPSWSFSSDRNSPKSTNLPSVLSVHSSSSSAKTSQTLDSSCASKQGAEE
MPCPGPAELPGARGGGREGASLRLSLQSCDSSWDSSPGARNGMQPLTSTALKAQSTAPTA
GHSWGTDDLELDAFDIDDLEEEDWESPVPVPGPAAPPTPPCRPGPQGPPAKSLLSKIMSR
AKGSAVGSTPAAPKPGLPMVTKNHPDPVVHNPALERFRGMKFPHSAEMMNIFHKKFGLHC
FRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTIVISPLRSLIIDQVQKL
KTLDIAATYLTGDRTDADASKIYMQLSKKDPVIKLLYVTPEKVCASSRLISALENLYDRK
LLARFVIDEAHCVSQWGHDFRQDYKRLNMLRRKFRSVPMMALTATANPRVQKDILNQLEM
LKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAI
LQKEGLAALAYHAGLTDSNRDLVQQKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLP
KSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMV
HYCENVVECRRVQLLAYFGETNFNPTFCKDHPEVICDNCSRKKDYKSRNVTEDVKSIVRF
VREHCAQAGRVNGRRKPXXXNMMVDIFLGSTSAKIQSGIFGKGAAYSRHNAERLFRKLVL
DKILDEDLYITANDQAVAYVILGERAQAVLDGSLQVEFHETESASAIRRQRASMAKMSQR
EEMVKQCLSELTDTCKTLGKVFDVHYFNIFSTSTLKKIAETLSSDVEVLLQIDGVTEDKL
EKYGAEIIKVMDKYSECSIPEDAACPGGDVAAGSTGLLGSDGEAEDAGTTSSYFGNNTNQ
RRKRKRAPTSRDSKRKRTGGGGSQPFHPRGGYSRYRRTKKLPSSKAPASSGASSGSYSVG
GTQGAAGKLAMMALPKPKSRSFLQPSYSVF
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatctgcgagctggtggatgccatccccctgcaggagctgcaggccctgggc
tgtgcccgagccctgctgcagcaccgggacctcaggagaaaactgctggctaattctgtc
agtttgaaccagaatggcatcaacaccactgttcctagaagctggaaggctcccatggag
cagggccctcgtgtgtgtcctggtgcaggtcctggcccaagctggagcttcagttctgac
agaaactcccccaaatccacaaacctcccatcggtgctttctgttcattccagcagctct
tctgccaaaaccagccaaaccttggacagctcttgtgcttcgaagcagggtgctgaggag
atgccctgcccgggccctgcagagctgcctggtgccaggggaggtggcagggagggagct
tccctcaggctcagcctgcagtcctgcgacagcagctgggacagcagtcctggggcgagg
aacgggatgcagcccctgaccagcacagccctgaaggcccagagcacagctcccactgca
gggcacagctggggcaccgacgatctggagctggatgcctttgacatcgatgacttggag
gaggaggactgggagagcccggtgcccgtgcccggccccgcggcgccgcccacgccgccc
tgccggcccggcccgcagggccctcctgccaaatccctcctgtccaagatcatgtccagg
gccaaagggtcagctgtgggatccactcctgctgctccaaagccaggcctccccatggtg
acaaagaaccatccagatccagtggttcataaccctgcactggagcgtttcaggggtatg
aaatttccccattctgcagaaatgatgaatatattccacaagaaatttggattgcactgt
ttccggacaaaccagctggaggccatcaatgctgccctgctgggggaggattgtttcatc
ctcatgcccacaggaggtgggaagagcctgtgctaccagttaccagcctgcgtctctgcc
ggggtcaccatcgttatttctccactgaggtcgctcatcatcgatcaggttcagaagctg
aagactttagatattgctgcaacatacctgactggtgacagaacagatgctgatgcctca
aaaatctacatgcagttgtccaagaaagaccctgtcataaagctgttgtatgtcacccct
gagaaggtgtgtgccagcagccgcctgatatccgccctggagaacctctacgacaggaaa
ctcctggcacgttttgtcattgacgaggcccactgtgtcagccagtggggccatgacttc
cgacaagactacaagcggctgaacatgctgcgcaggaagttccgctccgtgcccatgatg
gccctgactgccaccgccaacccccgcgtgcagaaggacatcctcaaccagctcgagatg
ctcaaaccacaagtatttacaatgagcttcaacaggcataacttgaaatatgatgtgttg
cccaagaagccaaagaaggtggcgatggattgcttggaatggattaaaaaatatcacccc
catgactctgggataatctattgcctttcccggcacgagtgtgacaccacagcagccatc
ctgcagaaggaggggctggctgccctggcctaccacgccggcctcaccgattccaacagg
gatcttgtgcagcagaagtgggttaatcaggagggatgccaggtgatatgtgcaacaatt
gcctttggaatgggcatcgacaagcccgatgtgcgctacgttatccacgcgtcccttccc
aaatccatcgagggctactaccaggagtctggcagagctggcagggatggagagatgtcc
cactgcctgctcttctacagctacagtgatgtgacgaggctgagaaggctcatcctgatg
gagaaggacgggaacagccacacgaggcagacccacttcaacaacctgtacagcatggtg
cactactgtgagaacgtggtcgagtgccgccgcgtccagctgctcgcctacttcggggag
accaacttcaaccccaccttctgcaaagatcacccagaggtgatttgtgacaactgcagt
agaaagaaggattataaatcacggaacgtgaccgaggatgtgaagagcatcgtgcggttt
gtgcgcgagcactgcgcgcaggcggggcgggtcaacggcaggcggaaaccnnnnnnnnnn
aacatgatggtggacattttcctaggttcaacgagtgccaagattcagtctggaatattt
gggaagggggctgcctattccaggcacaatgctgaaaggctgttcagaaaactagtcctg
gacaagatcctggatgaggatttgtacatcacagctaatgaccaggcagtggcatatgtc
attctgggagaaagagctcaggctgtgctggatgggtcactccaggtggagttccacgag
acagagagtgccagtgccatcagaaggcaaagggcttccatggcaaagatgtcccagcgg
gaagagatggtgaaacagtgcctcagtgaacttacagacacctgcaaaaccctgggcaaa
gtctttgatgtgcattacttcaatattttcagtacttccaccctaaagaaaatagcagaa
accttgtcctcagatgtggaggtgttgctgcagattgatggtgtcacagaagacaaactg
gagaagtacggtgcagaaataattaaagtgatggataaatactcagaatgctccatccca
gaagatgccgcctgcccgggcggggacgtggctgcgggcagcacgggcttgctggggagc
gatggggaagcagaggatgcaggcacaacctccagctattttggcaacaacacaaaccag
aggaggaagaggaagcgggcgccgacctccagggactccaagaggaaaaggacgggtggt
ggtggcagccagccgttccaccccagaggtggctacagcaggtacagaaggaccaagaag
ctgccgagttcgaaggctccagcttcctccggtgccagctccgggtcctacagcgttggt
ggcacacagggagctgctgggaagctggccatgatggcactgcccaaacccaaatccagg
agcttccttcagccttcgtattccgtattttag
DBGET
integrated database retrieval system
