Geospiza fortis (medium ground-finch): 102035943
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Entry
102035943 CDS
T03755
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
102035943 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102035943 (SCN8A)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102035943 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
102035943
NCBI-ProteinID:
XP_014166335
UniProt:
A0A6I9ZDS8
LinkDB
All DBs
Position
Un
AA seq
1975 aa
AA seq
DB search
MAARLLAPPGPESFKPFTPESLANIEKHIAELKKKQRSKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTPFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSRGF
DWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISK
LSSKSAKERRNRRKKRKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSI
MNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIP
IRGRHRRSSXTQXXXXXXXXXIFPTLRRSIKRNSTVDCNGVVSLIGGPPSSMPGGRILPE
GTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPCWYK
FANTFLIWECHPYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFEHVL
SVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRS
FRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGRSYKECV
CKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGN
LVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKAKVREFMQAHFKQ
READEVKPLDELYDKKVNCIANHTGADINRDIDFLKNGNGTTSGIGSSVEKYIIDEDHMS
FINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDESSSSEGSTIDIKPEVEE
VPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFETFII
FMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTNAWC
WLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIP
SIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEHRFEIDEVNNKTECEALMPPNST
EIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYIYFV
IFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIP
RPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINFVFVIFF
TCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLARIG
RILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDM
FNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVGIFF
FVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEY
SKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDIL
RQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFISRRPATTKL
ENGGANREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRREKAKRQKDGRVAKS
NT seq
5928 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccaggccccgagagttttaaacccttcactccggag
tccctggccaacatcgagaaacacatcgcggagctgaagaagaagcagcgctccaagcag
gacagcagccaccgggacgacgatgaagacagcaaaccaaaaccaaacagtgaccttgag
gcgggcaagaatttgcctttcatctacggggacatccctaaagggctggttgctgtgcca
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaacagaggg
aaaacacccttccgatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcagtatttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaacccgccagaatggtcaaagaat
gtggagtacacattcaccgggatttatacatttgaatcactcgtgaaaatcattgccaga
ggtttctgtatagatggcttcaccttcctgagggatccctggaactggctggatttcagt
gtcatcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagcattgaga
actttcagagttctccgagctttgaaaactatctctgtaattccaggcttgaagaccatc
gtgggtgccctgatccagtctgtgaagaagctgtcggatgtgatgatcctgacagttttc
tgtctcagtgtctttgccctcattgggctccagctgttcatgggcaatttaaggaacaag
tgtgtgatctggccaattaatgtgaacgagaccttcctggataatggctccaggggcttc
gactgggaggaatacaccaacaatatgtcaaatttttacatcattcctggtgcccccgac
cctttgctctgtggtaacagctcagatgcaggccaatgtccagagggatacacgtgcatg
aaggcaggacggaaccccaactacggctacaccagctttgacaccttcagctgggctttt
ctggctttgtttcgccttatgactcaggacttttgggaaaacttgtatcaattaacttta
cgagcggcaggaaaaacctacatgatcttctttgtgctggtgatctttgtgggatccttc
tacttggtgaatctgattttggctgtggtggccatggcctacgaggagcagaaccaggcg
accctggaggaggcagagcagaaggaggcagaattcaaggccatgttggaacaattgaaa
aagcagcaggaagaagcacaggctgctgccatggtcacctcggcagggacggtgtctgaa
gatgctgtggaagatgatggtggggggaggatgtcccggagctcctcggagatttccaag
ctcagttccaagagtgccaaggagcgtcggaacaggaggaagaagcggaaggacaaggag
ctgtcggaaggagatgagaagtgtgacaatgagaaggtgttcaagtcagaatctgaggat
ggcatgaggaggaaagcgttcaggctgccagataacaggctggggaggaaattttccatc
atgaaccagtctctcctcagcatcccgggctcccctttcctctcccgccacaacagcaag
agcagcatcttcagctacaaggggcgcttccgcgacccgggctcggagaacgagtttgct
gacgacgagcacagcacggtggaggagagcgagggcaggagggactcgctcttcatcccc
atccgcggccgccaccggcgcagcagcnncacacagnnnnnnnnnnnnnnnnnnnnnnnn
nnnatcttccccacgctgcgccgcagcatcaagaggaacagcaccgtggactgcaacggc
gtcgtgtccctcatcggggggccgccctccagcatgcctggtggccgcatcctgcccgag
ggtaccactgagattgaaattaggaagaagcctggtgggtctctgttggtctcaatggat
caggtgaatgcatcctatggaaggaaggatcggaccaacagtgtcatgactgggttgacc
aacacccttgttgaggagctggaagagtcccagaggaaatgtcccccttgctggtataaa
tttgccaataccttcctgatctgggaatgccacccatactggatgaagctgaaggagatt
gtgaacttaattgtcatggatccttttgttgacttggccatcaccatctgcatcgtgctg
aacacgttgtttatggccatggagcaccaccccatgacccccgagttcgagcacgtgctc
tctgtgggaaatctggttttcactgggattttcacagcagaaatgttcctgaagctcatt
gcaatggatccatactattattttcaagaaggctggaacatctttgatgggtttattgtc
tccctgagtttaatggagctgagtctggcagatgtggagggactttctgtgctgcgatct
ttccgattgctgagagtcttcaaactggccaagtcctggcccactctgaatatgctgata
aaaatcattggtaactcagtgggtgccttggggaatttgaccttggtgctggccatcatc
gtgttcatcttcgccgtggtgggaatgcagctctttggcagaagctacaaggagtgtgtc
tgcaagatcaatccggagtgtgagctaccccgctggcacatgcacgatttcttccactcc
ttccttattgtcttccgtgtgttgtgtggggagtggattgagaccatgtgggattgtatg
gaagtggcaggacaggccatgtgcttgattgtcttcatgatggtcatggtcatcggaaat
ttagtggtgctgaacctgttcttggccttgttgctgagctccttcagcgcagacaacctg
gcagccacggacgacgatggggagatgaacaacctgcagatctcggtgatccgcatcaag
aagggcattgcctggaccaaggccaaggtcagggagttcatgcaggcccactttaagcag
agagaggccgacgaggtgaaacccttggatgagctgtacgacaagaaggtgaactgcatc
gccaaccacaccggggccgacatcaaccgcgacatcgacttcctcaagaacggcaatggc
accaccagcggcatcgggagcagcgtggagaaatacatcatcgacgaggaccacatgtcc
ttcatcaacaaccccaacctcaccgtgcgcgtccccatcgccgtgggcgagtccgacttc
gagaacctcaacacggaggatttcagcagcgacacggatcctgatggcagcaaagagaaa
ctcgacgagagcagctcctctgagggcagcaccatcgacataaagcctgaagtggaggaa
gtgcccgtggaggcaccagaggagtacctggacccagatgcctgtttcacagaaggttgt
atgcagcgctgcaagtgttgtcaggtcaatattgaggaggggctgggaaagtcgtggtgg
accttgaggaaaacttgtttcctaattgtggagcacaattggtttgagactttcatcatc
ttcatgatcctcctgagtagtggggctctggcttttgaggatatttacattgagcagagg
aaaaccatccggaccatcctggagtatgcagacaaggtcttcacttacattttcatcctg
gagatgctgctgaagtggtgtgcctatggatttgtgaaattcttcaccaacgcctggtgc
tggctggatttcctcatcgtggctgtctctttagtcagccttatagctaatgccctgggc
tactcggaactaggtgccataaaatcccttaggacactaagagccttgaggcctttaaga
gcgttgtcccgatttgaggggatgagggtggttgtcaatgccttggttggcgctatccct
tccattatgaatgtcttgttggtctgccttatcttctggctgattttcagcattatgggg
gttaacctgtttgccgggaaatatcattactgctttaatgaaacagctgagcatcgcttt
gagatagatgaagttaacaacaagacagaatgcgaggctctgatgccacccaactccacg
gagatccgatggaagaatgtgaaaattaactttgacaacgttggggcaggatatctggct
ctgctgcaagttgctacgttcaagggctggatggacatcatgtatgcagctgtagattcc
agaaagcaagaagagcagcccaaatacgaggacaacatttacatgtacatttattttgtt
atcttcatcatctttggctcctttttcaccctgaacttgttcattggtgtcatcattgac
aacttcaatcaacaaaagaaaaagtttggaggtcaagatattttcatgacagaagaacaa
aagaagtactacaatgccatgaaaaaactgggctcaaagaagcctcaaaaacccattccc
cgacctctgaaccgcatccaaggagctgtcttcgacttcgtcactcagcaagccttcgac
atcgtcatcatgatgctcatctgcctcaacatggtgaccatgatggtggagacagacaca
cagagcaagcagatggaggacatcctttactggatcaactttgtttttgtcatctttttc
acctgtgagtgtgtgctgaagatgttcgccttgaggcactactatttcaccatcgggtgg
aacatctttgacttcgtggttgtgattctgtccatcgtggggatgttcctggctgaaata
attgagaagtacttcgtgtcacccactctgttccgagtcatccgcctggctcgcatcggc
cgcatcctgcgattgatcaagggagccaaagggatccgcacgctgctttttgccttaatg
atgtccctgcctgccttgttcaacatcggcctcctgctcttcctggtcatgttcatcttc
tccatcttcggcatgtccaacttcgcctacgtcaagcacgaggccggcatagacgacatg
ttcaactttgagacttttggcaacagcatgatctgcttgttccagatcaccacctcggcc
ggctgggacgggctcctgctgcccatcctgaaccggcccccagactgtgacctggacaag
gagcacccgggcagcggcttcaagggggattgcgggaacccctcggtggggatatttttc
tttgtgagctacatcatcatctccttcctgatcgtggtcaacatgtacatcgccatcatc
ctggagaacttcagcgtggcgacagaggagagcgcagatccgctcagcgaggacgacttc
gagaccttctacgagatctgggagaagttcgaccccgacgccacgcagttcatcgagtac
agcaagctggcggacttcgccgacgccctggagcatcccctgcgtgtcccaaagcccaac
accatcgaactcatcgccatggacctgcctatggtaagtggggacaggatccactgtttg
gacatcctgtttgccttcaccaaacgtgtcctgggggacagcggggagctggatatcctg
agacagcagatggaggagaggtttgtggcttccaacccttccaaagtgtcttatgagccc
atcaccaccacgctgcggcgcaagcaggaggaggtgtcggcggtggtgatccagagggct
tacagggctcgtttggcacgacggggcttcatcagccgaaggcctgccaccaccaaactg
gaaaacgggggagccaacagggagaaaaaggagggcaccccctccacggcgtccctgccg
tcctacgacagcgtcaccaaacccgagaaggagaaacagcagcgggcggaggagggcagg
agagaaaaggcaaagagacaaaaagacggcagggtggccaagtcttga
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integrated database retrieval system
