Geospiza fortis (medium ground-finch): 102036919
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Entry
102036919 CDS
T03755
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102036919 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102036919 (PCF11)
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102036919 (PCF11)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102036919 (PCF11)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102036919 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
102036919
NCBI-ProteinID:
XP_014167235
LinkDB
All DBs
Position
Un
AA seq
1523 aa
AA seq
DB search
MSAPESTAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLVNMAITAL
VLRQSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMGQHSSHT
KDQSHRKEFSPSVTSQSETKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSKAKSESPS
PLKNKLPDTKDNKNQECESAKVSDISKRDPRLKRHLQDKSEGKEDEVKEKRRSTEKKEKE
DHKTCEHRPVGSRNKVINGAVQKQDTATEESEKQGGKQGRSSSRKRSRSRSPKARSPSTH
SPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSNKRNVKQE
VRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEESKNSQQSD
EHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKAN
DRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCVREEPRSPFTERFKRARYEDPEKAPFP
ESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSSRIDG
PAGQAATRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPAGQVGGAG
PLRFEGPLGPLRFEGPAGQPVGGARFEGSGVGLRFEGPHGQPSGGLRFEGPHGQPMGPRG
QPGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPMGPHG
PSGGGLRFEGPHGPSGGGLRLDGPRGQPGLGPRLIDGAVHQGAGGLRFDGPLGRAGPRFD
GCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPASRFD
LPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDGSPG
PNFNGPAGPGVQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGGNQVRAVSQVSLMSAQPG
PYGQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSA
QANETSAQPNAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFT
TSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEK
AHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDE
KIYHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPEDTP
PPACAEESAPASTEIKTEPEESV
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcaccgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggtgaacatggctattacagctttg
gttttgagacagtccaagcaacacatgtctcccacacctcatatgacagttaaaccacct
catcaaactgctgtgcaatctgaaaaaaacaaaccatccccaagtcctccacttcatgat
atcaaaatagtgaacagggatcctcggcttaatagaatgggtcaacattcttctcatact
aaagatcagtctcacaggaaagaattttcaccgagtgtgaccagtcagtctgagaccaag
ggaaacaaaacagcacaggctgaaaaacagaactcaacgaagtcagaaaaatcaaaagca
agtgaaaaaacacagaagaaagaacttgaacagtccaaagcaaaatctgaatcgccatcc
cctttgaaaaataagctgcccgatactaaagacaataaaaatcaggaatgtgaaagcgct
aaggtttctgacataagtaagagggatccaagacttaaaagacatcttcaggataagtca
gaggggaaggaagatgaggtcaaagaaaaaaggagaagtacagaaaagaaggaaaaagag
gaccataagacttgcgaacatagaccagtagggagcagaaataaagtgattaatggtgct
gttcagaaacaagacacagctacagaggagtcagaaaaacagggtgggaaacaaggaaga
tcaagtagtagaaaacggtcacgatcacgctctcctaaggcaagatcaccatctacacac
tctccaaaaagacgagagaggagatcacctaaaagaagacttcggagtttatctcctact
tcatcaactcctaaaattggaaagatacgtcagataggccctaagcagtctcatgttgaa
gaaggcacacaagcagcaagagatgaaagaaattctaataagagaaatgttaaacaagag
gtgcgtgatccaaggagattgaaaaaagcccaagaagaaagaccccaggagacagccacc
cagcattctgcaaaagcttctccagatccaaaggagaatgcagaaaactggcagggatcc
aaatcaggcaagaggtggaaatctggttgggaagaaagtaaaaactcacagcagagtgat
gaacaccaagcacttgttaaatcccctcaccaaagacatcgggagaactggcctgctggt
aaaggaattctatcaccccgagcaccaaagcagcagcaccggttaagtgtggatgccaat
ttacagattcccaaagaattgacatctgcaagtaaaagagaattacttaagaaggctaat
gaccgcttaacatctggtgaaataacacaagatgagtttctcatggtcgctcatcagatc
cgacagttgttccagtatcaggaaggaaagcacagatgtgttcgagaggaaccaaggtca
ccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaagcaccatttcca
gaaagtccaggatcaagatttggaggtattgaggcaaagcagaggataagtgcactgatg
gaagacagacctctcttcgatggctcacctagaccgactgctgcaagggttggggtagat
gggcaaggcagtccttttgttgatggtcctgctgctggttcaagttccagaattgatggg
ccagctggacaggctgctacaagatttgaggggcctttggtgggcgcaggtgcatctcag
tttgatggaccactggcaggagcagggggagctggagccttaagatttgatgggccacca
gggcagctggcagggtccctgagatttgaaggacccgcaggccaggttggcggagcaggt
ccgctgcggtttgagggacctcttgggcctttgcggtttgaggggcctgcagggcagcct
gtaggtggtgctagatttgaaggttctggagttggtctcaggtttgagggtcctcatggt
cagccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcggggt
caaccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggt
caaccagggggtagcctcaggtttgaggggccacatttacagccgttggggccccatgga
caacttggaggtggcctcagatttgaggggccacatggtcagcccatggggccacatggg
ccatcaggtggtgggctcaggtttgagggaccacatggaccatcaggtggtgggctgaga
ctggatggaccacgtggtcagccgggtctaggtcctaggttgattgatggagcagtacac
cagggagctggtggacttagatttgatggtcctcttggtcgtgctggtccaagatttgat
ggctgtcatggagctggatttgatggtcagcctggacagctgtctctcctgcaaagattt
gatggcattcatggacagcctggtccaaggttggcacctggccaacaggcacaagcaaga
tttgaaacagccatacctcaaagatttgatggacctcaccagccagcctctaggtttgac
ttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccatcctgcctcaaga
ctagaaatgtcaccatatggacaaggtggtccatttgttgaacatcctggccagggctac
aacggaccagctcatggaatgcagttccagagacctgatatatttgatggttcgcccgga
ccaaatttcaatgggccagctggcccaggagtacagaacttcccactgagagcagctgga
cattactttgaagaaaaaggtctccagggtcctcagtatggaaatttcagtaatatgcca
atgggaggtaatcaggtaagagctgtttcacaggtttctctgatgtctgctcaaccagga
ccttatggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgca
ggagccctttcccattcatatcctgataaccaccttggacaggttgatgtgaatgaattg
ttcgctaaactgctgaaaacagggatcctcaaattgtctaaaactgattccacttcagca
caagcgaatgaaacctcggcccagccgaatgctgaagaagaagatgatgatcagaatgaa
gatcagaatgttccagacctcactaacttcatagttgaagaacttagacagcgttacgat
agtgttataaatcggctgtacactggaattcagtgttactcctgtggaatgagattcact
acttcacagacagatgtttatgcagatcatttagattggcattatcgccagaaccggaca
gaaaaagatgttagcagaaaaattacacacaggagatggtactacagtttaacagactgg
attgaatttgaagaaatagcagatttagaggagcgtgctaaaagccagttctttgaaaaa
gctcatgaagaggttgtgttgaagacgcaggaggctgccaaagagaaggagtttcagagt
gttccagctggaccagctggagcagtggagagctgtgaaatttgccaagaacaatttgaa
cagtattgggatgaggaagaggaagagtggcacttgaagaatgctatcagggtagacgaa
aagatttaccatccatcttgttatgaagattaccagaatacatcatcatttgattgcaca
ccatctcccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaa
caagaaacagaagagtcctgtgactcacctaaaatcaaagaagaacctgaagacacccct
cctcctgcctgtgcagaagagagcgcacctgcatctacagaaatcaaaacagaacctgag
gagtctgtttaa
DBGET
integrated database retrieval system
