Geospiza fortis (medium ground-finch): 102037101
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Entry
102037101 CDS
T03755
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102037101 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102037101 (SKIV2L2)
03041 Spliceosome [BR:
gfr03041
]
102037101 (SKIV2L2)
03009 Ribosome biogenesis [BR:
gfr03009
]
102037101 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
gfr03016
]
102037101 (SKIV2L2)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102037101 (SKIV2L2)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102037101 (SKIV2L2)
Spliceosome [BR:
gfr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102037101 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102037101 (SKIV2L2)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102037101 (SKIV2L2)
Transfer RNA biogenesis [BR:
gfr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102037101 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102037101
NCBI-ProteinID:
XP_014162878
UniProt:
A0A6I9Z600
LinkDB
All DBs
Position
Un
AA seq
1021 aa
AA seq
DB search
MNPVCAYCCSFRATLKRVWHHPFGTKRLEEKPSVPAAIVKPKREAEIDSTENVILGKKPK
LEDVLSDDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPRTGKAAKEYPFILD
AFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYRE
MYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDTE
RGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIF
PAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMI
MERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQV
EHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSA
SKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNS
AFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEAQYNKIVIPNEE
NVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDDYGWGVVVNFSKKS
NVKSNSDELDPLYVVEVLLHCSKDSLKNFATESAKPARPDERGEMQVVPVLVHLVSAISS
VRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKIEAFE
HRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKIAKRELKKARTVLQMDELKCRKRVLRRL
GFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEM
PKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMDVVYTWANGANFAH
ICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagtttgtgcctactgctgttcattccgggcaacactgaagagagtctggcac
catccttttggcacgaaaagattggaagaaaaaccttcagtaccagcagcaatagtcaag
ccaaaaagggaagctgagattgatagtactgaaaatgtcattttggggaaaaaaccgaaa
ttggaagatgttttatcagacgatgttaatctgacagatctgatgcctcaagtaaaagtg
cagtctgtggaaactgttgaaggttgtacacatgaggttgcgcttccagcaaatgaagaa
ttcacaggtctgaagccaagaactggaaaagctgcaaaagaatatccatttattcttgat
gccttccagagagaagctattctttgtgtagataataaccagtctgtgttggtgtcagct
cacacatcagctggtaaaactgtttgtgctgagtatgcaattgccctggctttgagggaa
aagcagcgtgtgatatttacaagtccaattaaagctctgagtaatcagaagtaccgtgag
atgtatgaagaatttcaggatgttggtttgatgactggggatgtcaccattaatcctaca
gcttcttgtttggtcatgacgactgagatcttgagaagtatgctttacagaggttctgag
gttatgcgtgaagtcgcctgggttatttttgatgaaattcactacatgagagatacagaa
cgtggtgtggtttgggaagagactattattttgcttcctgataatgtacattatgtgttc
ctttctgcaactattccaaatgctcgtcagtttgctgaatggatctgccatcttcacaaa
cagccttgccatgtgatttacactgactatcgacctactccactgcagcattatatattt
ccagcaggaggagatggactccatctggttgttgatgaaaatggagatttcagagaagat
aattttaacacagctatgcaagtgcttagagatgcaggagacttagcaaaaggggatcag
aaaggaaggaaaggaggaacaaaaggtccttcaaatgtttttaagattgtgaagatgatc
atggaaaggaatttccaacctgtgattattttcagcttcagtaagaaagactgtgaagcc
tatgcacttcagatgacaaagttagatttcaatacagatgaagaaaaaaaaatggttgaa
gaagtcttcaataatgcaattgattgtctctcagatgaagacaaaaagcttcctcaggtt
gaacatgtgcttccccttctgaagcgaggaattggtattcatcatggtggtttgcttcct
atcttaaaagaaaccatagaaatccttttctcggagggcctaataaaggccttatttgca
acagagacttttgctatgggaattaatatgccagccagaactgtgctgtttacaagtgcc
agtaaatttgatggaaaagatttccgatggatatcctcaggtgaatacattcaaatgtca
ggtcgcgcaggacgccgaggtatggacgacagaggaatagtaattcttatggtggatgaa
aaaatgagtccaaccattggcaagcaacttttgaagggctcagctgatcccttaaacagt
gctttccacctgacatacaacatggtactgaacttacttcgagtggaggaaattaaccct
gaatacatgttagaaaaatcattttatcagttccagcattacagaactattccagaaatt
gtggaaagagtcaataatttggaagcacagtacaacaaaattgtaattcccaatgaagaa
aatgtggtgatatactacagaatccgccagcagcttgcaaaactgggtaaagatattgaa
gagtatattcacaaaccaaagtactgcttgccctttctacagccaggaagactggtcaag
gtgaagaatgaaggtgatgactacggatggggagtggttgttaatttctctaagaaatca
aatgttaagtcaaattccgatgaattggacccattgtatgtagtcgaagtgctcctgcac
tgcagcaaagacagtttgaaaaattttgctactgagtctgcaaagccagccagacctgat
gagagaggagagatgcaggttgttcctgttttggtgcatcttgtctcagctatcagcagt
gtccgcctctacataccaaaagacctgagacctattgataacaggcaaagtgtgttaaaa
tctgtacaggaggtacagaaacgttttcctgatggagtacccttactagatcctattgat
gacatgggcatcaaggaccaagggttgaaaaaagtaatccaaaaaatagaggcatttgag
cacaggatgtattcacatcctcttcacaacgatccaaacttggaaaccatatacaaactt
tgtgaaaaaaaagcacagattgctatggatattaaaatagcaaagcgagaattgaagaaa
gccagaactgtcctgcaaatggatgaactcaaatgccgcaagcgagttttgagaagactg
gggtttgccacgtcttcagatgttattgagatgaaaggacgggttgcttgtgaaatcagc
agtgctgatgaactactcctgacggaaatgatgttcaatggtctcttcaatgatttgtct
gcagagcaggcaactgcactactcagctgttttgtgtttcaagagaattccagtgaaatg
ccaaaactgactgaacagttggcaggaccacttcggcaaatgcaggagtgtgcaaaaaga
atcgccaaggtgtcagcagaagcaaaactggaaactgatgaagaaaattacttgaattct
ttcagacccaacctaatggatgttgtgtatacatgggcaaatggagctaactttgctcac
atctgcaaaatgacagatgtctttgaaggtagcataattcgttgcatgaggcgtctagaa
gaactgcttcggcagatgtgccaggctgcaaaagccattgggaacacagaactggaaaat
aagtttgcagaggggattacaaaaatcaagagagatattgtgtttgctgcaagcctttac
ctgtaa
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