Geospiza fortis (medium ground-finch): 102037160
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Entry
102037160 CDS
T03755
Symbol
TRPV1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
102037160 (TRPV1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102037160 (TRPV1)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
102037160 (TRPV1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
Ank_4
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102037160
NCBI-ProteinID:
XP_005424539
UniProt:
A0A6I9HMW9
LinkDB
All DBs
Position
Un
AA seq
844 aa
AA seq
DB search
MSSILGKMKKFGSFDMEESEVTDEHTDGEDSVQEAPDNPQGPLSSRVHPPKSNIFARRGR
FVMGDSDKDMAPMDSFCQMDHLMAPSVIKFPVNLERGKLHKLLSTDSITGWSEKAFRFYD
RRRIFDAVAQGNTKDLSDLLLYLNRTFKHLTDEEFKEPETGKTCLLKAMLNLHDGKNDTI
PLLLDIARKTGTLKEFVNAEYTDNYYKGQTALHIAIERRNMYLVKLLVQNGADVHARACG
EFFRKIKGKSGFYFGELPLSLAACTNQLCIVKFLLENPYQAANIAAEDSMGNMVLHTLVE
IADNTKDNTKFVTKMYNNILILGAKINPILKLEELTNKKGLTPLTLAAKTGKIGIFAYIL
RREIKDPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEILAYSSETPNRHEMLL
VEPLNRLLQDKWDRFVKHLFYFNFFVYTMHITILTAAAYYRPVQKNEKPPFTFGYSTGEY
FRVTGEILSVLGGLYFFFRGIQYFVQRRPSLRTLIVDGYSEVLFFVHSLLLLSSVVLYFC
GQELYVASMVFSLALGWTNMLYYTRGFQQMGIYSVMIAKMILRDLCRFMFVYLVFLLGFS
TAVVTLIEDDNEGQETNISDYARCCHLKRGRTSYNSLYYTCLELFKFTIGMGDLEFTENY
RFKSVFVILLVLYVILTYILLLNMLIALMGETVNKIAQESKSIWKLQRAITILDIENSYL
NCLRHSFRSGKQVLVGITPDGQDDYRWCFRVDEVNWSTWNTNLGIINEDPGYSGDLRRNL
SFSIRPGRVSGKHWKTLVPLLKDGEKRREEPHKPPEEVKLKPVLEPYFEPEDSEELKESI
PKSA
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccatccttgggaagatgaagaagtttggcagttttgacatggaggaatctgaa
gtgacagatgaacacacagatggggaggactctgtccaggaagcccctgacaacccccag
ggcccactcagctccagggtgcacccacccaaaagcaacatttttgcaagacggggccgc
tttgtgatgggggacagtgacaaggacatggctcccatggactccttctgccagatggat
cacctgatggcaccttctgtcatcaaattccctgtgaatttggagaggggcaaacttcac
aagctcctatctacagattccatcacaggctggtcagaaaaagctttcagattttatgac
cgcagaagaatctttgatgctgtagcccaaggcaacacaaaggacctcagtgacctgcta
ctctaccttaacagaaccttcaagcatctcacagatgaggagttcaaagagcctgaaact
ggcaaaacctgtttactgaaagccatgctgaatctacatgatgggaaaaatgataccatt
cccttgctgctggatattgcaaggaaaactggaactctgaaagagtttgttaatgcagaa
tatactgacaactactacaagggccagactgctcttcacattgccatcgagaggaggaac
atgtacctggtgaagctcctggtccagaatggagcagatgttcatgccagagcctgtggg
gagttcttcaggaaaatcaaagggaaatctggcttttattttggagagctgcctttgtcc
ctggctgcctgcaccaaccagctctgcattgtgaaattcctcctggagaatccctaccag
gcagccaacatcgctgctgaggactccatgggcaacatggtcctgcacacactggtggag
attgcagataacaccaaggataacaccaagtttgtgaccaagatgtataataacatattg
atccttggtgccaaaattaatcccatcctcaagctggaagaactcaccaacaagaaaggg
ctgactcctttaactctggcagcgaaaacagggaagatagggattttcgcttacatcctc
agacgggagatcaaagaccccgagtgcagacacttgtccaggaagttcactgaatgggcc
tatggacctgtccactcctctctttatgacctgtcctgtatagacacctgtgagaaaaat
tcagtgctggagatccttgcctacagcagtgagacaccaaaccgtcacgagatgctgctg
gtggagccccttaacaggctgctgcaggacaagtgggaccgctttgtcaagcacttgttt
tacttcaacttctttgtctacaccatgcacatcaccatcctcactgcagctgcttactac
agacctgtacagaaaaatgaaaagcctcccttcacctttggttacagcactggggaatat
tttcgagtaactggagagatcctgagtgtactgggaggcctctatttctttttcagaggg
atccagtatttcgtgcagaggcgcccatcactgaggaccctgatagttgatggctacagt
gaggttcttttctttgtccactccctgctcctgctgagctctgtggtgctgtacttctgt
ggccaggagctctacgtggcttccatggtgttctccctggccctgggctggaccaacatg
ctctactacacgcggggcttccagcagatggggatttactcggtcatgatcgccaagatg
atcctcagagatttatgtcgcttcatgtttgtctatctcgtattcctcttgggattttct
acagctgtggtgactttgattgaagatgacaacgaggggcaggaaacaaatatctctgac
tatgccaggtgctgccacttgaaacggggccgcacctcctacaacagcctctactacacc
tgcctggagctcttcaagttcaccattggcatgggggacctggagttcacagagaattac
aggttcaagtctgtctttgtcatcctgctggtgctctatgtcatcctcacctacatcctc
ctgctcaacatgctcattgctctgatgggggagactgtcaacaaaattgcccaggagagc
aagagcatctggaaactccagagagccatcacaatcctggacattgagaacagctacttg
aactgtctgaggcactcgttccgctctgggaagcaagtcctggtggggatcacccctgat
ggccaagatgattacagatggtgcttcagggttgatgaagtgaactggtccacgtggaac
actaatctgggcatcatcaacgaagaccctgggtactctggggacctcagacgaaatctc
agtttctccattaggcctggcagagtttcagggaagcactggaaaacattggttccactt
ctaaaagatggagagaagaggagagaagagcctcacaagccaccagaagaagtcaaatta
aaacctgttttggaaccttattttgagccagaagattctgaggagttgaaagagtcaatt
ccaaagtcagcctaa
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