Geospiza fortis (medium ground-finch): 102037248
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Entry
102037248 CDS
T03755
Symbol
PMS1
Name
(RefSeq) PMS1 homolog 1, mismatch repair system component
KO
K10864
DNA mismatch repair protein PMS1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102037248 (PMS1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
102037248 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
102037248
NCBI-ProteinID:
XP_005416036
UniProt:
A0A6I9HCC9
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All DBs
Position
Un
AA seq
933 aa
AA seq
DB search
MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDIKLENYGFSKIEVRDNGSG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSISEVLVTTKTAADDFGMQ
YALDSNGRVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCEYPEINLSGFL
PKADSDTSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQVTQKDCTRLYPVFFLSIT
VPASAVDVNITPDKTQVLLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDMFV
HRTDQTDVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFSGDNVHSC
LDKREVSKSDAFPDSSLNLLREEEQNGQNMGDIQSNSVPVDPESKKANECVLSCDNIDKI
DKNEEALVPKDLPEISADSWSMGSAFEDILGDKLEPVKILIPGAGGTVNKQNEYTGEKSS
DLQSSDQSIKKKNVISEKFGRVTAYDLINSKIIKKPKSAFEFFTHECRPKLIDDNPKTSM
NDILLTIEEQWKNLNEEEKRNYEIKATKDQERYNREVRKANAQPMHRPAKEAEKHKAKLK
SSASDQQKLDKIFHNQIEKKGKLEQPVKIVTVPFSLSSCRRHLQRQEKNISDEHELFLIR
RQSFPDVWILATEKNVKLLNPYRLEEALLCKRLLMNHKLPLEKLDNPIVLTDSLIGGSQY
IAALYKMQKNYQSFHGPGYLSDPRLVANGFQIKVIEGVSAAESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEICECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggagagacaattcggctcctttcaagttctcaggtgattacttca
gttgtcagcgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatattaaactggagaattacgggtttagcaaaatagaagtaagagacaatggcagtgga
atcaaggttgatgatgtcccagttatggccatcaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacgtacggcttccgtggggaagctttgggatcgatt
tgcagcatatcagaagttttggtcacaacaaagacagctgctgatgattttggcatgcag
tatgctttggatagcaatggacgtgtaacctctaaaaagccttcccatcttgggcaaggt
accacagtaacagtcctaaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgcgaatatcctgagataaatctttctggatttctc
ccaaaagctgactcagacacttctttgacaagcctttcaagttcagaaaggagtttcatt
tttataaataatcgtccagttcttcagaaggaaatactgaagttaattcgacaatactac
agtcaggtgacgcaaaaggactgtactcgtttatatcctgttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatataacacctgataaaacacaagtcttgctgcat
tataaggaatctgtcttacttgcagttgaaaatgtgttgaaatcactgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacacgctcatacttcattcctttcactcagcagtgatgtgcaaaactgtcaagcagga
aaaaacgcagagatctgcttaaatcatcagacatttagtggtgataatgtacacagttgc
ctggacaaaagagaggtttctaagagtgatgcctttccagacagttccttaaatttattg
cgtgaggaggaacagaatggacagaatatgggtgatattcaaagtaatagtgttcctgtg
gatcccgagtctaaaaaagccaatgagtgtgttttgagttgtgataatattgacaaaata
gataaaaatgaggaagctttagtccctaaggacttacctgaaatctctgctgatagttgg
agtatgggaagtgcatttgaagacattctgggagacaagctggaacctgttaagatctta
attcctggagctggagggacagttaacaagcaaaatgaatacactggtgaaaaaagcagt
gatctacaaagctcagatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
cgtgtgacagcttatgacttaattaatagcaaaataataaagaaaccaaagtctgcattt
gaatttttcacacatgagtgtcgtccaaaattgatagatgataatccaaagaccagcatg
aatgacatcctgctgacaattgaagagcaatggaagaatttgaatgaagaggaaaaacgg
aattatgaaataaaagccactaaggaccaggaacggtacaacagagaggtcaggaaagcc
aatgcacagccaatgcaccgaccagcaaaggaggcagaaaaacacaaagccaagctgaag
agttctgcatctgaccagcagaagcttgataagatatttcataaccagattgaaaagaag
gggaaactggaacagcctgtgaaaattgtgacagtgcccttttctctgagttcctgtaga
cgtcaccttcagagacaagagaaaaatatttcagatgaacatgaacttttcctgatccgt
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtcaagttgctgaat
ccgtatagactggaagaggccctgctatgtaagagattattgatgaaccataagcttcca
ctagagaaactggacaatccaattgtgttaacagacagtcttattggtggatctcagtat
atagctgctctttataaaatgcagaagaattaccagagtttccatggaccaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcagct
gcagaaagtcatctggaaatagaagggatggcaaattgtctgccgtattatggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggagatatgtgaatgt
aggcctctcaaagtgataaactacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgtcctttttttcatcacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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