Geospiza fortis (medium ground-finch): 102037461
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Entry
102037461 CDS
T03755
Symbol
SMG5
Name
(RefSeq) SMG5, nonsense mediated mRNA decay factor
KO
K11125
protein SMG5
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102037461 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102037461 (SMG5)
03032 DNA replication proteins [BR:
gfr03032
]
102037461 (SMG5)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102037461 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
102037461 (SMG5)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102037461 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
102037461
NCBI-ProteinID:
XP_014166025
LinkDB
All DBs
Position
Un
AA seq
1011 aa
AA seq
DB search
MFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLL
LYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDLARYQN
ELAGVDTELLAERFYYQALSVAPQVGMPFNPLGTLAGSKYYNVEATYCYLRCIQSEVSFE
GAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQPKSSSLD
SELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMVIICLMSV
HSLKRAGKQCLFGNFLVSIQHVVLTSSISLCCVLAGSKQYSAAIAFTLALFSHLINHVNI
RLQAELEEGENPVPAFQSDGTDDQEPREPVNSIEKEAEAELANHQPSEEQRKNDCKKSKK
YSRLSCLRRRRHAQKVDESDLSEGFDSDSSQSSIKGSDGSESGSEKSDEEAEAAFDVETD
SDMNSQESRSDLEDMEDEPGEEGSSQGKSGPKEALKNCVDSSGLGDSKSPSISKSEAVDP
AVNGPASLSTNDASIASNLQAMSTQLFQTKRCFRLAPTFSNILLKPNSEAPALKDGIESK
PCVNGDLEKPSLAEQDDVSDSEESISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWL
RTNTDLIIMCAQSSQSLWNRLSVLLNLLPSAADLQESGLALCDEVRDMLSDAELPDLKAN
LLLPEDVALRNLPPLKNAHKRFNFEQDRPIFSAVEESVVRICCIRSFGHFITHLQGSILQ
FNSELGIFISIAQSEQDNLLHQAQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQ
QPKAQSAMSPYLVPDTQALCQHLALVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDS
IRYLEAEFKKGNRYIRCQKDVGKSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDD
TTGMVTIITGFQLEDPSSFSVPMQSAIQAAANASIEIKNVLEFYKQWKEMG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgcatccagtggattatggaagaaaagcagaagaactgctctggagaaaggtt
tactatgaagttatccagctcattaaaacaaataaaaagcacatccacagccgcagcacc
ctggagtgtgcatacaggactcacctggtggctggcataggattctaccagcacctcctg
ctctacatccagtcccactaccagctggagctgcagtgctgcattgactggacacacgtg
acagaccctctcataggctgcaagaaacccgtgtctgcgtcagagaaggagatggagtgg
gcacagatggcctgtcaccggtgtctggtttatctgggagatctagctcgctatcagaat
gagctggcaggtgtggacacagagctgctggctgagcgattttactatcaagccctgtct
gttgcaccacaagttggaatgcccttcaacccactggggacattggcagggagcaagtac
tacaatgtggaagcaacctactgctacctacgctgcatccagtctgaagtgtccttcgaa
ggtgcctatgggaacctgaagcggctgtatgacaaagcagccaagatgtaccatcagctg
aagaaatgtgagaccaggaagttgtctccaagcaagaaacgaggaaaagacattaagagg
ttgctggtgagcttcatgtacctgcagagtcttttgcagccaaagagcagctctttagat
tctgagctgacatctctctgccagtctgtgctggaggatttcaacctgtgcttgttctac
ttgccctctcctcctaacctgagctcaactagtgaagatgaagaagagtatgagagtggc
tactccttccttcctgatctcctgatctttcgcatggtgatcatctgccttatgagcgtt
cacagcctcaagagggcaggtaagcagtgcttgtttgggaatttcctggtgagcatccag
catgtagtgctcacctcctccatctcactgtgctgtgtgcttgcaggttccaagcagtac
agtgcagccattgccttcacgctggctctcttctctcacctgataaatcacgtcaatatt
cgcctccaggctgagctagaagaaggagaaaatcctgtcccagcctttcagagtgatggc
acagatgaccaggagccacgggagcctgtgaactcaattgagaaggaagctgaagctgag
ctggccaatcatcagcccagcgaggagcagcggaagaacgactgcaagaaaagcaagaag
tactctcgactgtcctgtctgcgccgccgccgccacgcccagaaggtggatgagagcgac
ctgagtgagggctttgactctgactccagccagagctccatcaagggcagtgatggctca
gagagtggctcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacagac
tccgacatgaacagccaagagtctcgctctgacttggaggacatggaggatgaaccgggt
gaggaaggaagcagccaaggcaaaagtgggcccaaagaggccttaaaaaactgtgtggat
agcagtgggctgggggactccaagagcccaagcatctctaaaagtgaagctgtggatcca
gcagtcaatgggccagcttccctgagcactaatgatgcaagcatagccagtaatctgcag
gccatgtccacccagctgttccagaccaaacgctgctttcgcttggctcccaccttcagc
aacatcctcctgaaacccaacagtgaagcacctgccttgaaggatggcatagagagcaag
ccatgtgtcaatggagatctggagaagcccagcttggcagagcaagatgatgtgtctgac
tctgaagaaagcatttcaagtaacaaatcgtgcagaaatgagcgatcccttcaggagaag
ttggagattgtgaccaacgaagggctgctgcttactgtcaaggtgttcctggactggctg
aggacaaacacagacctcatcattatgtgtgctcagagctctcagagcctgtggaacagg
ctgtctgtgctcctgaaccttctgccttctgctgcagacctgcaggaatcagggctggcc
ctgtgtgatgaagtcagagacatgctgagtgatgctgagctgccagacctgaaggccaac
ctgctgctccctgaagacgtggccctgcgcaatctcccccctctgaaaaatgcacacaag
aggtttaacttcgagcaggatcggcccattttctctgcagtcgaggagtctgtcgtgcgc
atctgctgcattcggagcttcggccacttcattacccatttgcaaggcagcatcctgcag
ttcaactcagagcttgggatcttcatcagcatagcacagtctgagcaagacaacttgttg
caccaggcccaggcacagtttcacatggctgcagaggaagctcgacggaacaggctcatg
agagacatggctcagcttcggctgcagctggaggtgtctcagctggagggcagtctccag
cagcccaaggcacagtcagccatgtctccttacctggttcctgacacccaggccctctgc
cagcacctggctcttgtcaagcagctggccactagtgggaggttcatcatcatcatccct
cgaacagttattgatggcctggacttcctgaaaaaggagaacgccggtgctagggacagc
attcggtatctggaggcagaatttaaaaagggaaacaggtacattcgttgccagaaagat
gttgggaagagctttgagaggcataaattgaagagacaagatttagatgcctggaatctc
tataaaatactggacagctgcaagcagctgacagtgtcccagggcagtggggaggatgac
accacgggaatggtcaccatcatcacgggcttccagctggaggacccgagctccttctca
gtgcccatgcagtctgccatccaggcagccgccaacgccagcatagagataaaaaatgtt
ctggagttctacaagcagtggaaagagatgggctga
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integrated database retrieval system
