Geospiza fortis (medium ground-finch): 102037762
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Entry
102037762 CDS
T03755
Symbol
PAN3
Name
(RefSeq) PAN3 poly(A) specific ribonuclease subunit
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102037762 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102037762 (PAN3)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102037762 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
102037762 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
102037762
NCBI-ProteinID:
XP_005417729
LinkDB
All DBs
Position
Un
AA seq
764 aa
AA seq
DB search
MDGGGLADANLTDSYFSTSFIGVNGFGSPAXXXXXYPMMQRMTNSSSSPSLLNDSAKQYA
GHDPLTSPNSSLFNDFAALSVSQRRKLAKPAFPSFITDLEDRYNTVVPRKYRLGMLDERI
VPVGSKARKSKNPIGCLADRCKTGVPINMVWWNRVTENNLQTPNPSASEFIPKGGSTSRL
SNVSQSSMSAFSQALFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRRRSH
TPNPANYMVPTSASASVTNAVSQPPSTGQVIQKETVGGTTYFYTDTTPAPLTGMVFPNYH
IYHPAAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADIPAVPAEVDSYHSL
FPLEPLPPPNRIQKTSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKK
IQHSNIVTLREVFTTKAFGEHSLVFAYDFHAGGETMMSRHFNDPSADSYFTKRKWGQHDG
PLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILVTGKTRLRVNCVGIF
DVLTFDNSQNNPLALMAQFQQADLISLGKVVLALACNSLSGIQRENLQKAMELVTINYSS
DLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRL
LAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIISCLNKLD
AGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggatggtggtgggttagctgatgctaatctaacggattcatactttagcaccagcttc
attggcgttaatggatttggaagtcctgctnnnnnnnnnnnnnagtatcccatgatgcag
aggatgacaaatagcagcagctcccctagccttctcaatgacagtgccaagcagtacgca
ggccatgatccactaacttcaccaaattcatccttgtttaatgactttgctgccctcagc
gtatctcaaaggaggaagctggcaaaaccagcatttccttcgtttatcactgacttggag
gacagatataatacagtcgtgcccaggaagtatcgactgggaatgctggatgagaggata
gttcccgtgggatcaaaagcaagaaaatcaaagaaccctattggctgtctggctgacagg
tgtaaaacaggagtacccatcaatatggtttggtggaacagagtcacagaaaacaattta
cagacaccaaatccttctgcaagtgagtttattcctaaaggaggatcaacctccaggctg
agtaatgtatcccagtcaagtatgtctgccttctctcaagccttgttctctcacccctcc
atgggaagtcctgctactgctgggttagcaccaggaatgtcactgtcagcaggatcttct
cctcttcattctcccaaaataactcctcatacatctcctgctcctcgaagaagaagtcat
actcctaacccagcaaactatatggtgcctactagtgcctctgcgtctgtcactaacgct
gtctctcagcctccatctactggccaggtgatccagaaggaaacagtgggtggaacaacg
tacttctacactgatacaactccagcacctctcacaggaatggtttttccaaactaccac
atctaccatccagctgcacctcatgttgcttacatgcagccaaaagcaaatgcaccttcc
ttcttcatggcagatgagctcagacaggagctcatcaacagacacttaataactatggcc
cagattgatcaggctgatattcctgcagttcctgcggaagtggacagctaccacagtctc
tttcctttggaaccactgccaccgcccaatcgtatacagaaaacgagcaactttgggtac
attacatcgtgctataaagctgtaaatagtaaagatgacctgccctattgccttcggagg
atacatggtttccgtcttgttaacacgaagtgcatggtattggttgacatgtggaaaaag
attcagcactcaaatatcgtaactttgcgtgaagtgtttaccactaaagcttttggagaa
cattctctagtgtttgcatatgattttcatgctggaggagagactatgatgagcagacac
ttcaatgaccctagtgctgattcctatttcacaaaacggaaatggggtcagcatgatgga
cctctgccacggcagcatgcggggttgcttccagagtctttgatatgggcatatattgtg
cagctcagctctgccttacggaccattcacacagcaggactggcgtgcagagttatggat
ccaaccaagattctggtaacaggaaaaacaaggttacgagttaattgtgttggaatcttt
gacgttttgacatttgacaacagtcaaaataatccactggcattaatggctcagtttcag
caagcagatctgatctccctggggaaagttgtgttggctttggcttgcaattctttatca
ggaattcagagagagaatttgcagaaagcaatggaactggtgacaatcaactattcctct
gacctgaagaatctgattttgtatttgctgactgaccaaaacagacttcgcagtgtaaac
gatatcatgcctatgattggtgcacgattctatactcagttggatgctgctcagatgcga
aatgatgttatagaagaagatctagcaaaggaggtgcaaaatggaaggttgtttaggctc
ctagcaaaattgggaacaatcaatgagaggccagagtttcagaaggacccaacatggtca
gaaactggagacaggtatttactaaagctctttcgagatcaccttttccatcaggtgaca
gaagcgggtactccttggattgacctcagtcacattatctcatgtcttaacaagttagat
gctggtgtgccagaaaaaataagcctcatttccagagatgagaagagtgtacttgtggta
acttacagcgatttaaaacgctgctttgaaaatacttttcaagaactgattgcagccgca
aatggtcagttgtag
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