Geospiza fortis (medium ground-finch): 102038102
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Entry
102038102 CDS
T03755
Symbol
TDRD9
Name
(RefSeq) tudor domain containing 9
KO
K18408
ATP-dependent RNA helicase TDRD9 [EC:
5.6.2.5
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102038102 (TDRD9)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
102038102 (TDRD9)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102038102 (TDRD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
TUDOR
DEAD
HA2_C
nSTAND3
AAA_22
AAA_19
DUF2689
Motif
Other DBs
NCBI-GeneID:
102038102
NCBI-ProteinID:
XP_014167288
LinkDB
All DBs
Position
Un
AA seq
1294 aa
AA seq
DB search
MALCTLKVAEGAIFRSSYPVCEEMTAYVGPAVETGPQSTSLSQCESSDSISVPISKCKYL
DMPTAKHREKIVSLIQNNSVVVVEGATGSGKSTQIPQYVLDYCMTRSMPCNIAVTQPRKI
SASSLARWISKERSWTLGGFVGYQLSLENVSTKETRLLYMTTGVLLQKIVSARSLTQFTH
IFIDEVHERTEEIDFLLLVTRKLLYTNSQSVKLILMSASINSKELADYFALPVHNGLNPV
CIFKVEGRPFAVEEYYLDDLKDIFDLQFHRQSLGEPVIEQKMYQVAVSLIQSFDELEKRS
SGGTLERGSVLVFLPGLGEIRYMHSCLSDKYQRWQVYPLHARATLEEQSKVFSATVPGYR
KVILATNVAESSVTVPDVKYVIDFCLTKILFCDKETNYQNLRLCWASKTNCNQRKGRAGR
VSKGYCYRLIRKDFWADCIPEKSEPEMLHCPLGSTVLKLKKLDMGEPKALLATALSPPSV
GDIERTIVQLKELGALTTSPQTEEDLHDGELTFLGTVLTQLPLDLHLGKLIVLGHVFGCL
EECLIIAAALSSRNFFAVPFKKHVDAYRKKMFFAGNSRSDCIAILNAFRAWQACKEKGKL
RNPKEELEWGRSNCVHINKIKEVAELFHNLKKRVSAFNMHVKAQPSPMDEEYVCKQRFIL
QVVIAGAFYPNYCTFGKCNGEIAMKDLAGKDPKTTVMLKNIPPYGYIYHKQLQSLLRQCG
QVKSISYNGSRAFVEFSRNPKEVFKVLPEVYLAVKMSQLKIPFELCVHHPEDIKRQVQGA
GAVGLEFIRVNVDCQKQTVEPVKILFGDLQMSKMIPSRFLSIRVTEVVEVGHFWGYRTDE
KNTAVLRALSAEIDYQNLMDLAVPPCVDVLCLAPFTYLGKRGYYRAHVLYIHGDLAEVFF
VDYGNRSEVPLNKLKEIPRCLQGLPFQALEFKICKMCPSARSLVCGEPWSCSASQRFASL
VSGCTLLVEVYSLVHGVLHVDVFRHSGRRGLVNIRDVLIEESHAELAEESHESQQNHDLL
KELFLDGAKKEEQMPISARQEEKHLIERLLNCFSEKKSDAPTHKVTVFGPFSPYQLKCYS
LTKISQFRNVFIHKESINSIVVHDGAEDPFQQLLVATDISVTAAGSVILGETSLMPPIHG
LLALLSMLFAPAIELRVDKSGKYFTGVLCGLGWSQTSGAPLFPENDMELIFDVHFGLEDI
TEINSLRTAMNKLLCEQALHSGQEQVAQLQEDIRQKLLCLICKSKPRDIIDPTWYDKPYA
WNQVESQCIIDESEKQHERGNLVYQLHKLVLLND
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgcacactaaaggtcgctgaaggagccattttccgttccagttatccggtg
tgtgaagagatgactgcttatgtggggccggctgtggaaactggacctcaaagtacttca
ttgtctcaatgtgaatcaagtgattcaatttctgtaccaataagtaagtgtaaatatttg
gatatgcctacagccaaacacagggaaaagatagtgtctctcatacaaaacaattcagtt
gtggttgtggaaggagcaactggcagtggaaagagcacccagattccacagtatgttttg
gattattgcatgacccggtctatgccctgcaacattgctgttacccagcctcggaaaatc
agcgccagcagccttgccaggtggattagcaaggaaagatcatggacacttggtggattt
gtaggataccagttaagtttagagaacgtttcgaccaaggagacgaggttgctgtatatg
acaactggagttcttcttcagaaaatcgtttctgccaggagtctaactcagttcacacac
attttcattgatgaagtgcatgagcgtacagaagaaattgatttcttgctcttggtgacc
cgtaaactgttgtatacaaattcacagtctgtgaagcttatattgatgtctgcttccatc
aactctaaagaattagctgattactttgcacttccagttcataatggtttgaatccagtc
tgcatatttaaggtggaaggcagaccttttgcagttgaagaatattatcttgatgatttg
aaggacatttttgatttacagtttcatcgtcagagccttggtgagccagtgatagaacag
aaaatgtatcaagtggcagtgtctctgattcagtcatttgatgagctggaaaagaggagc
agtggtggtacattggaacgtggcagtgtgctcgtgtttttaccaggtttaggtgaaata
agatacatgcactcatgcctctcagataaatatcaaaggtggcaagtgtacccacttcat
gcacgtgcaacattggaggagcaaagtaaagtattttcagctacagttcctggctacaga
aaagttattctagctaccaatgtagctgagagctctgtaacagttcctgatgttaagtat
gtgatagatttctgcttgactaaaattctgttttgcgataaggaaactaattaccaaaat
ttgaggctttgctgggcatctaagacaaactgtaatcaaagaaaaggtcgtgctggacgt
gtttccaaaggctactgttacaggctcatacgcaaggacttctgggcagactgtattcca
gagaagtcagaacctgagatgctgcattgcccattaggatctacagtcttaaaattaaag
aagcttgatatgggggaaccaaaagccttgctggcaacagctctttctccacccagtgtg
ggtgacattgaacgtacaatagttcagctgaaagagctgggagcacttacaacctctccg
caaacagaagaagatctgcatgatggtgagctaactttcttaggaacggtattgacacag
ttgccactggacctgcatcttggaaaattgatagtccttgggcatgtctttggttgctta
gaggaatgccttattatagctgcagcactgtcttcacggaatttttttgcagtacctttc
aaaaagcatgttgatgcatacaggaaaaaaatgttttttgctgggaatagtaggagtgac
tgtattgcaattctgaatgcatttagggcatggcaggcctgcaaagaaaaaggaaagctg
agaaatcccaaggaagagcttgagtggggtcgatctaattgtgttcatataaacaagatc
aaagaggtggcagagttatttcacaacttgaaaaagagagtcagtgcatttaacatgcat
gttaaagctcagccatctccgatggacgaggaatatgtgtgcaaacaacgcttcatcttg
caggtggtaatagctggtgctttctatccaaactactgtacttttggaaaatgtaatgga
gaaattgccatgaaagatcttgctggcaaggatccaaaaacaactgtgatgctgaagaac
attcctccctatggatatatataccataaacagttgcagtcactgcttagacagtgtggg
caggtaaaatctatttcctacaatggatcaagggcttttgtggagttctcccgtaatcca
aaggaggtttttaaagttctccctgaagtgtacctggcagtcaagatgtcacagctgaag
attccttttgagctgtgtgttcatcatcccgaggatatcaaaagacaagtgcaaggtgca
ggagctgtaggtttggaatttataagagtaaatgtggattgtcagaagcagacagtggag
cctgtgaaaatcttatttggtgatttacaaatgtcaaagatgatcccaagtcgttttcta
tccatcagggtaacagaggtagtagaagttggacacttctggggttacagaacagatgaa
aaaaacacagctgtactccgagctctaagtgctgaaattgactatcagaacctgatggat
ttagcagtgcctccatgtgtcgatgtgctttgtctggcaccattcacatatctgggaaaa
agaggatactacagagctcatgttctgtatattcatggggatcttgctgaggtttttttt
gtggattatggcaatagatcagaagtgcctttaaataagctgaaagagattccaaggtgt
cttcaagggcttcctttccaggctttagagttcaagatctgcaagatgtgtccctctgcc
agatccttggtgtgtggggagccgtggagctgcagtgccagccagagatttgcctctctg
gtcagtggctgcactctgctggtggaggtttattccctggtgcacggcgtcctgcatgtg
gacgtgttccggcactcgggccgccgggggctggtgaacattcgggatgtgctcatcgag
gagagccacgctgagctggctgaggagtcacacgagtcacagcaaaaccatgatttgctc
aaggaattatttttggacggagcaaagaaagaagagcagatgcccatatctgcaagacag
gaagaaaagcatctgattgaaagattgttgaattgcttttctgaaaagaaatctgatgca
ccaacccacaaggtaacagtttttggtccattcagtccttaccagttgaaatgctacagt
ctgaccaaaatatcccaattcagaaatgttttcatacataaggagagcataaactccatt
gttgtccatgatggtgcagaagatccctttcagcagctcttggtggccactgatatatca
gtaactgcagctgggtctgtgattttaggggaaacatctttgatgcctcctattcatggc
ctgcttgcactcctcagtatgctgtttgctcctgcaatagaactcagagttgataaaagt
ggaaagtattttactggtgttctgtgtggtttgggttggagtcagacatctggggctcca
ctgtttccagaaaatgatatggagttgatatttgatgtgcattttggactggaagacata
acagagataaacagtctgaggacagccatgaataagctgctctgtgagcaagcattgcat
tctggacaggagcaagtggcacagctgcaggaggatattcgtcagaagcttctctgttta
atctgcaaatcaaagcctcgagacataattgatcctacctggtatgacaagccgtatgca
tggaatcaggtggaatctcagtgtattattgacgagtctgaaaagcagcatgaaagagga
aatcttgtttatcagctccacaagcttgttttgttgaatgattaa
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