Geospiza fortis (medium ground-finch): 102038117
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Entry
102038117 CDS
T03755
Symbol
SMG7
Name
(RefSeq) SMG7, nonsense mediated mRNA decay factor
KO
K14409
protein SMG7
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102038117 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102038117 (SMG7)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102038117 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
102038117 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
102038117
NCBI-ProteinID:
XP_005423785
UniProt:
A0A6I9HM46
LinkDB
All DBs
Position
Un
AA seq
1125 aa
AA seq
DB search
MTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN
RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSA
IVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS
KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTRWSVSDFIKAFIKFHG
HVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVINLFQLHHLRDFSNETEQH
SYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYPLPAVKVSMDWLKLRPSVF
QEAVVDERRYIWPWLISLLNSFQPHEEDLSSNNATPLPEEFELQGFLALRPSFRNLDFSK
GHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEVGKLLFVTEIPELLLEDPS
EAKESLTLQETSMVEPLCADGSPGLKSVLSSGRSLSNSCDAGEKPMVTFKENIKPREMNR
EQGRIYPPKDIARERRDFSKGIVANKNDGKKDNNKRKNETKKCGLEKMQEAGKQNVAVQV
KSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPPLPSRPGFPPPTYVVPPPV
AFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIPYSQQRPSGPGPMTQGPQQ
TPPPSQQPLSSLPAQATAQSASQLQVQALAQQQQQQQSPTIAVQGLGKSPPHHSGFQQYP
QTDSSKQLWNPPQVQGSLGKIMSVKQPYYLQAQDPLKLFEQSLQPPVMQQQPLEKKMKPF
PMEPYNQNPSEVKVPEYYWDSSYGMTDNRVMSQQSGMDRRGKRQGVFRSEQDAVSRMTFE
KSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKNINTSTKTEVTPSVAHQE
TSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGT
PDNRDRRVADRWKTDKPAMGGFGLDYLPTTSSSSESSWHQSSAPSGTWAVQGPPAMEDSS
AVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgacagattcaaagctgggtccagcagaagtctggacatccagacaggctctacaggac
ttatatcaaaaaatgctagtgactgatttggaatacgctttagataaaaaagtggagcag
gacctttggaatcatgcctttaaaaatcagatcacaacactccagggtcaggcgaaaaac
agagcaaatccgaatcggagcgaagttcaggcaaacctttctctgtttttagaggcagct
agcggcttctacacacagttactccaggaattgtgcacagtttttaacgtggacctgccg
tgccgtgtgaagtcttcccagctggggatcattagcaataaacagacgcacaccagcgcc
atcgtgaagccgcagtccagctcctgctcctacatctgccagcactgccttgtccacctg
ggagatattgctcgctataggaatcagaccagccaggcagagtcttactatagacatgca
gctcagcttgtcccttctaatggtcagccttataatcagttggctatcctagcttcctcc
aaaggagatcacttgaccacaattttctactactgcagaagcattgctgtgaagtttcct
ttcccagctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgat
gaggtgaagactcgatggagcgtgtctgacttcatcaaggcatttattaaatttcatggc
catgtgtacctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagaa
cagttcaagaggttgttgttccagaaggccttcaactctcagcagttagtccatattact
gtgatcaacctgttccagctgcaccacctgcgagacttcagcaacgaaacagagcagcac
agctacagccaggatgagcagctctgctggacacagctcctggctctcttcatgtcattt
cttggagttctgtgcaagtgtcctttacagaatgactaccaggaggactctggggctgca
tatcctcttccagctgtgaaggtttcgatggactggctgaaacttaggcccagtgttttc
caggaggcagtggttgatgagagacggtacatatggccctggctgatctctcttctaaat
agtttccagcctcatgaagaagatctatccagtaataatgcaaccccgcttccagaggaa
tttgagttacaaggattcctggctctgaggccctcgttcaggaacttggatttttccaaa
ggccaccaggcaattacaggggataaagaagggcagcaacgtcggatacggcagcagcgc
ctgatcttcacaggcaaatggattgctgataaccagccaaggttgattcaatgtgaaaac
gaggtaggaaagctcttgtttgtgacagaaatcccggagctcttactggaggaccctagt
gaagccaaagagagtctcaccttgcaggagacatccatggtggagccactgtgtgctgat
gggagccctggactcaaatcagtgctgtcctctggcagaagcctgagcaacagctgtgat
gcaggagaaaaacccatggtcaccttcaaagagaatatcaagccccgggagatgaacaga
gagcaagggcgcatctaccccccaaaggacatagcgagggagagacgggactttagcaaa
ggaatagtagcaaataagaatgatgggaagaaggataacaataaaaggaagaatgagacc
aagaaatgtggcttggagaagatgcaggaagcaggaaagcagaatgtggcagttcaggtg
aaatcccagacggagatgaggaagactccggtatctgaagccaggaaaacacctgtaact
cagactccaagccaggccagcagttcccagttcatccctattcatcacccaggagccttc
cctccccttcctagccgaccaggatttcctcctccaacctatgttgtcccccctcctgtg
gctttctccatgagcacggggtacaccttcccaggtggtgtttctgtcccaggaaccttc
ctccagcccacagctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccac
attccttacagccagcaacggccctctggaccagggccaatgacccagggacctcagcaa
acaccacctccttcccagcaacccctctcatctttaccagctcaggcaacagcacagtcc
gcaagccagttacaggtgcaagctctggcccagcagcagcagcagcagcagtcccccacg
attgctgtgcagggcctggggaagagcccaccacaccactctggattccagcagtatcca
cagacagactcgtcgaagcagctctggaacccccctcaagtccaaggctccctggggaag
atcatgtctgtaaagcagccctattacctgcaggcccaggaccctctcaaactctttgaa
cagtcattacagcctcctgtgatgcaacagcaacctctggagaaaaaaatgaagcctttc
ccaatggagccatataaccagaacccctcagaagtaaaggtgccagaatattactgggac
tcttcctatggcatgacggacaacagggtgatgagccagcagtcgggcatggaccgcagg
gggaagcggcagggagtcttccgctccgagcaggatgctgtctccaggatgacctttgag
aagtccctgctggaaaaaccatcagaattgatgtctcagtcatcatctttcctgtccctc
agtggcttttctctaaatcaggaaagatatccgaacaacagcatgttcaatgaggtgtat
ggaaaaaacatcaataccagcacaaaaacagaagtcaccccttcagtagcccatcaggag
acttcactctattccctctttgaagggactccgtggtctccatcccttccagccagctca
gatcattcaacaccagccagccagtctcctcactcctccaaccccagcagcttgccaagc
tcccctccaacccataaccacaattctgttcctttctccaactttggacccattgggact
ccagacaacagagaccggagagtcgcagaccgctggaaaacagataagccagcaatggga
gggtttggtctggactatctcccaacaacatcatcctcttcggagagcagctggcaccag
tccagtgctcccagtggtacctgggcagtgcaaggccctcctgccatggaggactcctca
gctgtgcttatggagagcctgaagtccatctggtccagttccatgatgcaccccggcccc
tcggccctggagcagctgttgatgcagcagaagcagaagcagcagcgcggacaaggtgcc
atgaatccgccgcattga
DBGET
integrated database retrieval system
