Geospiza fortis (medium ground-finch): 102038486
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Entry
102038486 CDS
T03755
Symbol
HDAC2
Name
(RefSeq) histone deacetylase 2
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03082
ATP-dependent chromatin remodeling
gfr03083
Polycomb repressive complex
gfr04110
Cell cycle
gfr04330
Notch signaling pathway
gfr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102038486 (HDAC2)
03083 Polycomb repressive complex
102038486 (HDAC2)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
102038486 (HDAC2)
04350 TGF-beta signaling pathway
102038486 (HDAC2)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
102038486 (HDAC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102038486 (HDAC2)
Enzymes [BR:
gfr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102038486 (HDAC2)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
102038486 (HDAC2)
HDAC complexes
Sin3A-HDAC complex
102038486 (HDAC2)
BRAF-HDAC complex
102038486 (HDAC2)
REST complex
102038486 (HDAC2)
SHIP complex
102038486 (HDAC2)
MiDAC complex
102038486 (HDAC2)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
102038486 (HDAC2)
Heterochromatin formation proteins
Other heterochromatin formation proteins
102038486 (HDAC2)
Chromatin remodeling factors
NuRD complex
102038486 (HDAC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
102038486
NCBI-ProteinID:
XP_005418491
UniProt:
A0A6I9HEM3
LinkDB
All DBs
Position
Un
AA seq
458 aa
AA seq
DB search
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD
RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAV
HEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEED
KKETEDKKADVKEEDKAKDSSGEKTDAKGAKSEQLSNP
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctcacagaatccgaatgactcacaacttgctgctaaactatggcttatacaga
aaaatggaaatttatcgaccccacaaagcaactgctgaggaaatgaccaagtaccatagt
gatgaatacatcaaatttctccgatcaataaggcctgacaatatgtctgagtacagcaag
caaatgcagagatttaatgttggagaagattgtcctgtgtttgatggcctgtttgagttt
tgtcagctgtcaactggaggctctgttgctggggcagtaaaattgaacagacaacaaaca
gacatggctgtcaattgggctgggggacttcaccatgccaagaaatcggaggcatctggt
ttctgttatgtcaatgatattgtgcttgccatccttgagttactgaagtatcaccaaaga
gtgttgtatattgatattgatatccatcatggtgatggtgttgaagaagcattttatacc
acagatcgtgtcatgacagtatcattccataagtatggtgaatattttccaggcacaggg
gaccttagggacattggtgctggaaaaggcaaatactatgctgtcaactttccaatgagg
gatggtatagatgatgaatcatatggacagatatttaaaccaattatatctaaagtaatg
gagatgtaccagcccagtgctgtggtattgcagtgtggagcagattcactgtctggggac
agactgggatgctttaatcttactgttaaaggtcatgctaaatgtgtggaagttgtaaag
acttttaacttgccactgctgatgttaggaggaggaggctacacaattcgtaatgttgct
cgatgctggacatatgaaactgctgttgccttagattgtgaaattcctaatgagttgcca
tacaatgactactttgagtattttggaccagacttcaaactccatattagtccttcaaat
atgactaatcagaatacaccagaatatatggagaagatcaagcaacgcttatttgagaac
ttgcgcatgttacctcacgcacctggcgtacagatgcaggccattcctgaagatgctgtt
catgaagacagtggagatgaggatggagaagatccagacaaacgcatttctattcgagca
tctgataagcgcatagcctgtgatgaagaattttcagattctgaagatgaaggggaaggt
ggacgacgaaacgttgcagatcataagaaaggagcaaagaaagccagaatagaagaagac
aaaaaagagactgaggacaaaaaagcagatgttaaggaggaggataaagccaaggacagc
agtggtgaaaagacagatgccaaaggagcaaaatcagaacagctcagcaacccttga
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