Geospiza fortis (medium ground-finch): 102038604 Help Entry 102038604         CDS       T03755                                  Symbol PCDHGA12 Name (RefSeq) protocadherin-16-like   KO K16669   protocadherin Fat 4 Organism gfr  Geospiza fortis (medium ground-finch) Brite KEGG Orthology (KO) [BR:gfr00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:gfr04515]     102038604 (PCDHGA12) Cell adhesion molecules [BR:gfr04515]  Cadherins   Cadherin related    102038604 (PCDHGA12) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_2 Cadherin_C_2 Cadherin_CELSR2_9th Big_9 Motif Other DBs NCBI-GeneID:  102038604 NCBI-ProteinID:  XP_014166908 LinkDB All DBs Position Un AA seq 2288 aa AA seqDB search MMGVLVEVRRGGRRQRALLWAVLLAAWEAAWGQLRYSVPEEMPKGSFVGDVAKDLGLQLL ELGDRGFQIVSEGRTQYFALHGKKGHLVIGERIDREQLCRLVEKCVLRCELIVEGEMKFY EIEVEITDINDNAPSFREAEVELRISETTAPGSRFPLPDAHDPDTGRNSLQSYELSGDEH FSLAVQAGPGGDQRPELVLAKALDREEAAFHELLLRASDGGDPARTGTARIRVTVLDAND NAPVFSQAEYTVRVPEDVPVGSVLVTVTATDADEGLYGQVKYSLKKVSDMASDIFRLDYE TGEITLLRSLDFEEGNSYELEVQAYDGGGLFDTTKVTISVTDVNDNMPEISVRSAISEIS EDAPSGTVVALLHVQDRDSGANGEVRCSLDGGVPFRLQRSHSSYYSVVTARELDREQVSE YNVTVRAADGGSPALQSSAVLALRVLDVNDNAPVFLEERYSARLAENNAAGALVLTVRAT DADWGQNARVRYRLSHLRFSAASCCDTLPARPPPDEPAPLLGDDDPTGALPANPAPPSEN GNLYVNERLDREEMCGDSATCSVSFEVLVHNPLNIFHVEVAIEDVNDNSPVFSEAALELE IGEWTLPGARFPLEMARDADVGMNAVLTYQLTSNPSFSLALRESSEGSKQPELVLERALD REKQSSFELVLTAVDGGDPERSGTVQVRINVTDLNDNPPVFSKGVYEARVAENLPAGSLV LRVQATDADAGTNGRVFYSFSNVPGTIKALFTVDRDSGEVRTAGPLDFEEKNKYIFGLEA KDGGGLVSHCKVQIDIMDENDNAPEITLLSVSSPVPEDAPAGTVVALLNVKDPDSGENGQ VSANCPGEAPLSIVASSGGSYKVVTSGALDREQASEQRVTVVARDRGRPALWSSRELVLE VSDVNDNAPVFEEAAYSAYVAENNAAGALVLRVQARDADAGANGRVSYWLAGGSAGAAGR GGRRQRALLWAVLLAAWEAAWGQLRYSVPEEMPKGSFVGDVAKDLGLQLTEIRDSGVSIV SEGRTQYFALHGKTGHLVTAERIDREQLCRLVEKCVLRCELIVEGEMQVYGIEVEITDIN DNAPSFKEIELEERISEMTGPGSRFPLAEAHDPDSGRNSLQSYELSGDEHFSLAVQAGPG GDQRPELVLAKALDREEAAFHELLLRASDGGDPARTGTARIRVTVLDANDNAPVFSQAEY TVRVPEDVPVGSVLVTVTATDADEGLYGHVKYSLKKVSDMASNIFHLDSESGAITLLQSL DFEEGDSYELEVQARDGGGLFDTAKVTISVTDKNDNAPVISVRSALSEISEDAPSGTTVA LLHVHDQDSGANGEVRCSLDGDVPFRLEKSYQDYYRVVTARELDREQVSEYNVTVRAADG GSPALQSSAVLALRVLDVNDNAPVFLEERYSARLAENNAAGALVLTVRATDADWGQNARV RYRLAEGALRGVPVSHFVGIDGVRAFLHSYSHDVSLTADSRKSHLRFSAASCCDTLPARP PPDEPAPLLGDDDPTAALPANPAPPSRDGDVAEGAVTLPARKLQVASAGKKQLKYFTVNE ENGNLYVNERLDREEMCGESATCSVSFEALVHNPLNIFHIEVDIQDVNDNAPRFLKENIH YEIIESTPPGARFAVGVAEDADVGSNALQGYELEANGYFTVEVKESQDGSKFAELVLRRA LDRESEPSLRLLLTAVDGGDPARTGIAQLWINVTDANDNPPVFAQDRYRVSLGEDTPPGS TVLNVIASDADAGTNAHITYSFGKMPAKVLQKFVVDAQSGTITLQEELDFEDTRGYMLLV EARDGGGMVAHCKVEVEVQDVNDNAPEITVLSLSSPVPEDAPAGTVVALLNVKDPDSGEN GQVSCELSGEAPLSIVASSGGSYKVVTSGALDREQASEQRVTVVARDRGRPALWSSRELV LEVSDVNDNAPVFEEAAYSAYVAENNAAGALVLRVQARDADAGRNAWLSYELVQASEPAL FRVGLHSGEVRTARAVAERDAAKQRLVALVKDHGQPALSATATLHVLLGGSLREALPELS DRDAVSLLTSDLNLILVVSLSVVSLLFVSTVIFVFFFKCRQSRSPPIFITSDKELYSTLG SKAPYNYCSSTLPLPYSYEVCLASESGQKDFTFLRPGAAALSAGVLSADLGSGTPSGKDP PSPGSSTQSYPQVADFPRGATQMLSVLLSVLEKDRQRQLRVSPNWSGSELVLQCSSKTGI EPKDLFFPRCHRLPRSGVRENADVSGSAFRIVRGEDTQAESRSLSFWRMSLSSADAGGLQ LLRAQPPQ NT seq 6867 nt NT seq  +upstreamnt  +downstreamnt atgatgggggttttagtagaagtcaggcgcgggggccggcggcagcgagctctgctctgg gccgtgctgctggcggcgtgggaggcggcgtgggggcagctgcgctactcggtgcccgag gagatgcccaagggctccttcgtgggcgacgtggccaaggacctggggctgcagctgctg gagttaggcgaccgcggctttcaaattgtttccgaaggtaggacacagtatttcgctctg cacgggaagaagggacatttggtgataggagagcggatcgacagagagcagctgtgtcgg ctggtggagaaatgcgttctgcgctgcgagctgatagtggagggggaaatgaagttttat gaaatagaagtggagatcacggatattaatgacaacgcgccgagcttcagagaggcagaa gttgaactgagaatcagcgagacgacagcgccggggtcgcgatttcccctgccagatgct catgacccggatacgggccggaattccctgcagagctacgagctgagcggtgacgagcac ttctcgctggccgtgcaggcgggccccggcggcgatcagcgtcccgagctggtgctggcg aaggcgctggaccgggaggaggcggcgtttcacgagctgctgctgagggcgagcgacggc ggcgatccggcacggacgggcacggctcggatccgcgtgacggtgctggacgcgaacgac aacgcgcccgtgttcagccaggcggagtacacggtgcgtgtgcccgaggacgtgcccgtg ggctctgtcctggtcaccgtcactgccacggacgccgacgaggggctatacggacaggtg aaatactctttgaaaaaagtgtcggacatggcatcagatatttttcgtttggattatgag accggagagatcacgctactgagaagcctggacttcgaggaaggcaattcctatgaactg gaggtgcaggcatatgatggaggaggactttttgatactaccaaagtcacgatctcagtt acagacgtcaacgacaacatgccagaaatttcggtgaggtcagcgattagcgaaatatct gaggatgctccgtcggggaccgttgtagccctcctacacgtgcaggaccgggactcgggg gctaatggcgaggtgcgctgctcgctggacgggggagtcccgttccggctgcagcgatca cacagcagctactacagcgtggtgacagcgagagagctggaccgggagcaggtgtcggag tacaacgtgacggtgcgggcggccgacggcgggtcgccggcgctgcagagcagcgcggtg ctggcgctgcgggtgctggacgtgaacgacaacgcgccggtgttcttggaggagcgctac agcgcgcggctggcggagaacaacgcggcgggcgcgctggtgctgacggtgcgcgccacg gacgcggactgggggcagaacgcgcgcgtgcgctaccggctgagccacctgcgcttctcg gccgccagctgctgcgacaccctcccggcccggccgccgcccgacgagcccgcgccgctg ctcggggacgacgaccccacaggcgccctccccgcgaatcccgcccctccctcggagaac gggaacctgtacgtgaacgagaggctggaccgggaggagatgtgcggcgactcggcgacc tgctccgtcagcttcgaggtgctggtgcacaacccgctgaacattttccacgttgaggtg gcgatcgaggacgtgaatgacaactccccggtgtttagtgaagctgctctggaactggag attggtgaatggacgcttcccggtgctcggtttccgctggagatggcccgagacgctgac gtgggaatgaacgctgtgctgacttaccagctcaccagcaacccgtcgttctctctggcc ttaagggagagctctgaggggagcaagcagccggaattggtgctggagagagcgttggac cgggagaagcagagctcttttgagctggtgctgacagcggtagacggcggggaccctgag agatccggcactgtccaggttcgcatcaacgtgacagacttaaatgacaacccgcccgtg ttcagcaaaggtgtctacgaggcgcgagtggcagagaatttgccagcggggtcgctggtg ctgcgggtgcaggcgacagatgcggatgcgggcaccaacgggcgagtgttctactccttc agcaacgtccccggcaccatcaaggcgttgttcactgtcgacagggacagcggcgaggtc aggacggcgggtcccctcgatttcgaggagaagaataaatacatcttcggcctggaggct aaggatggcgggggtttagtgtcacattgtaaagtgcaaatagatatcatggacgagaac gacaacgcgcccgagatcacgctgctgtcggtgtcgagcccagtgcccgaggacgcgccg gctggcaccgtggtggccctgctgaatgtgaaagatccagactccggcgagaacggtcag gtgtcggcgaactgtccgggagaggcgccgctgtcgatcgtggcgtcgtcgggcggctcg tacaaggtggtgacatcgggcgcgctggaccgcgagcaggcgtccgagcagcgcgtgacg gtggtggcccgggaccggggcaggccggcgctgtggagcagcagggagctggtgctggag gtgtcggacgtgaacgacaacgcgccggtgttcgaggaggcggcgtacagcgcgtacgtg gcggagaacaacgcggcgggcgcgctggtgctgcgcgtgcaggcgcgggacgcggacgcg ggcgccaacgggcgcgtgagctactggctggcgggcggcagcgcgggcgcggcggggcgc gggggccggcggcagcgagctctgctctgggccgtgctgctggcggcgtgggaggcggcg tgggggcagctgcgctactcggtgcccgaggagatgcccaagggctccttcgtgggcgac gtggccaaggacctggggctgcagctgacggagatccgagacagcggtgtcagcattgtc tctgaaggtcggacgcagtatttcgctttgcacgggaagacgggacatttagtgacggcg gagagaatcgacagagagcagctgtgtcggctggtggagaaatgcgtgctgcgctgtgag ctgatagtggagggagagatgcaggtttatggtatcgaagttgaaatcacggacattaat gacaacgcgcccagcttcaaggaaattgagctggaagaaagaataagcgagatgacaggc ccggggtcgcggtttcccctggccgaggctcacgacccggactcgggtcggaattccctg cagagctacgagctgagcggtgacgagcacttctcgctggccgtgcaggcgggccccggc ggcgatcagcgtcccgagctggtgctggcgaaggcgctggaccgggaggaggcggcgttt cacgagctgctgctgagggcgagcgacggcggcgatccggcacggacgggcacggctcgg atccgcgtgacggtgctggacgcgaacgacaacgcgcccgtgttcagccaggcggagtac acggtgcgtgtgcccgaggacgtgcccgtgggctctgtcctcgtcactgtcacggctacg gacgccgacgaggggttgtacggacacgtgaaatactctttgaaaaaagtgtcggacatg gcatcgaatatcttccatctggactctgagagtggagcgatcactctgttgcaaagcctg gacttcgaggaaggtgactcctacgaacttgaggtgcaagcacgggacggaggaggcctt ttcgacactgccaaagtcacgatctctgtgacagataaaaacgataatgccccggtgatt tcggtaaggtcggcactaagtgagatttctgaggacgccccttcggggacgacggtcgcc ctgctgcacgtacatgatcaagactcgggggccaacggcgaggtgcgctgctcgctcgat ggggacgtcccattccggctggagaagtcctatcaagactactaccgtgtggtgacagcg agagagctggaccgggagcaggtgtcggagtacaacgtgacggtgcgggcggccgacggc gggtcgccggcgctgcagagcagcgcggtgctggcgctgcgggtgctggacgtgaacgac aacgcgccggtgttcttggaggagcgctacagcgcgcggctggcggagaacaacgcggcg ggcgcgctggtgctgacggtgcgcgccacggacgcggactgggggcagaacgcgcgcgtg cgctaccggctggcggagggcgccttgcgcggcgtgcccgtctcgcacttcgtgggcatc gacggcgtgcgcgccttcctgcactcctactcgcacgacgtgtcgctcacggccgactcg cgcaagagccacctgcgcttctcggccgccagctgctgcgacaccctcccggcccggccg ccgcccgacgagcccgcgccgctcctcggggacgacgaccccacagccgccctccccgcg aatcccgcccctccctcgagagatggtgatgtagccgagggtgcagtgacactgccggcg cgcaagctgcaggtggcgtctgccggcaagaagcagctgaaatacttcacggtgaatgag gagaacgggaacctgtacgtgaacgagaggctggaccgggaggagatgtgcggcgagtcg gcgacctgctccgtcagcttcgaggcgctggtgcacaacccgctgaacattttccacatc gaggtggatatccaggacgtgaacgacaacgcgccgcgctttcttaaggaaaatatccac tacgaaatcattgagtctacaccgcctggtgcccgatttgctgtgggtgttgccgaggat gcggacgtgggcagtaacgcgctgcagggctacgagctggaggccaacgggtacttcacg gtggaggtgaaggagagccaggacggcagcaagtttgcagagctggtgctgcgccgtgcc ctggatcgagagagcgagccgagcctgcgtctgctgctgactgcggtggatggcggagac ccggcccgcactggcatcgcccagctgtggatcaacgtcaccgacgccaatgacaaccca cccgtgttcgcgcaggaccggtatcgcgtcagcctgggcgaggacacgcctccgggatcg acggtgctgaacgttatagcatcagacgccgatgccggcaccaacgcccacatcacctac agcttcgggaaaatgccggccaaggtgcttcagaagtttgtggtggatgcacagagcggg acgatcactctgcaggaggagctggattttgaggacacgcgaggctacatgttgctggtg gaggcgagggacggtggcggtatggtagcccactgcaaggtagaggtggaggtgcaggac gtgaatgataacgcgcccgagatcacggttctgtcactgtcaagcccggtgcccgaggac gcgccggctggcaccgtggtggccctgctgaatgtgaaagatccagactccggcgagaac ggtcaggtgtcgtgcgagctgtcgggagaggcgccgctgtcgatcgtggcgtcgtcgggc ggctcgtacaaggtggtgacatcgggcgcgctggaccgcgagcaggcgtccgagcagcgc gtgacggtggtggcccgggaccggggcaggccggcgctgtggagcagcagggagctggtg ctggaggtgtcggacgtgaacgacaacgcgccggtgttcgaggaggcggcgtacagcgcg tacgtggcggagaacaacgcggcgggcgcgctggtgctgcgcgtgcaggcgcgggacgcg gacgcggggcgcaacgcgtggctgtcctacgagctggtgcaggcgtcggagccggcgctg ttccgcgtggggctgcacagcggcgaggtgcgcacggcgcgcgccgtggccgagcgggac gcggccaagcagcgcctggtggccctggtgaaggaccacgggcagccggcgctctcggcc acggccacgctgcacgtgctgctgggcggcagcttgcgggaggcgctgccggagctgagc gacagagacgctgtatctctcctgacgtctgatctgaacctcattcttgttgtgtcgctc tccgtcgtgtccttattattcgtttccacagtcatttttgtttttttctttaaatgtcga cagtcgaggagccctcccatttttataacttctgataaggaactgtattccaccttgggc tcaaaagcaccgtacaactactgcagcagcacgctgcccttgccctattcctacgaggtt tgtttagcctccgagtcggggcagaaggacttcacgttcctcagaccaggggcggcagcc ttgtctgccggtgtcctgtccgccgatctcggctcaggcactccttctgggaaggaccct cctagccctgggagctcgacacagtcttatccgcaagttgctgattttccccgaggagcg acgcaaatgttgtcagtacttctgtctgtcctggagaaggacagacagagacagctgcga gtttcaccgaactggagtgggtcggagctggtgcttcagtgcagctccaagactggcatc gagccgaaggaccttttttttccccgctgccaccggcttccccggagtggagtcagggaa aatgccgatgtgagcggctcagcttttaggattgtgcggggcgaggacacgcaggcagag tcgagatccctctcgttctggcgaatgtcgctgtccagcgctgatgcgggtggcttgcag ctcctacgagctcagcccccacaatag

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