Geospiza fortis (medium ground-finch): 102038708
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Entry
102038708 CDS
T03755
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03030
DNA replication
gfr03410
Base excision repair
gfr03420
Nucleotide excision repair
gfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102038708 (RFC1)
03410 Base excision repair
102038708 (RFC1)
03420 Nucleotide excision repair
102038708 (RFC1)
03430 Mismatch repair
102038708 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfr03032
]
102038708 (RFC1)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102038708 (RFC1)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102038708 (RFC1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102038708 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
RNA_helicase
Rad17
AAA_30
BRCT_2
AAA_5
AAA_16
RuvB_N
AAA_17
AAA_33
AAA_7
AAA_18
nSTAND3
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
102038708
NCBI-ProteinID:
XP_005415515
LinkDB
All DBs
Position
Un
AA seq
1143 aa
AA seq
DB search
MAANPGGGDTSQDIRKFFGVIPPGKRQGCETVKKSEKIRNGEGPSSGKKREKETKVDNSS
SEDDSKQKRTKKKRRIIYDSDSEEEVQSVKKSKKSPEKKAAASKSGKVLKRDPVVYISET
DEDDDFANKRISLKPKENGTSGVGCPGTNTVKKEEVKPQAKSKPLSPVKQTPTSALDFFG
TRSVQRSEKKLVASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAM
LDETPQKKKGRKNTEGEQTVLSINSSPNTTAGYKQTERVKATDLAGAAKNYSAKPQTKAE
QSEGSCLPPQSSDGKKEEMAEKERGAQNSVSRGKAASGKEEKKTPKKEKVSPKKTESISP
EDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSL
IERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLIRAMPGKKSKY
ELAAETEAKKVESKPKKTPEKAEAGKRNFSPYKREANNKKYKSTPEKGETIRSVKKETTA
VRKLTDFKRQTVEEKEAPKPKGNLVSEVNEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCA
NKLLRWLRNWHKNTLEDGQAKPGKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGY
SYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGASSSVSGKHVLIMDEVDGMAGNEDR
GGIQELIALIRHTKVPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKE
GLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDV
VRKVFATGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRA
ADSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGK
HDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLRDFGADGVQQAITFMDSYCLM
KEDVENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSAVKASKRQSGSAA
TLELSEDLTVEEIQSDEDEQDTVDSDAMIKQKKVKSSKLPKREKNEETTKKEGKRKEKTR
HLE
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaccctggaggtggtgataccagccaggatatccggaaattctttggtgtt
atacctcctggaaagcgacaagggtgtgagactgtgaaaaagagtgaaaaaattagaaat
ggtgaaggaccctcaagtgggaagaaaagggaaaaggagactaaggtggataattcatcc
agtgaagatgattccaaacagaagcggacaaaaaagaagagaagaataatctatgattca
gattcagaagaggaggtgcagtcagtgaaaaaatccaagaagtcacccgagaaaaaagca
gctgcttcaaaatctggtaaagttctaaagcgggatcctgttgtttatatttcagagaca
gatgaagatgatgattttgccaataaaagaatttccctgaaaccgaaggagaacgggacg
tcaggggttggttgtccaggaacaaatactgtgaaaaaagaggaggtaaaaccacaagct
aaaagcaaacccctctctccagtgaaacagactcccacctctgcacttgatttctttggg
acgaggagtgtccaacgctcagaaaagaagctggtagcaagtaaaaggaaagagccttca
cagagcagagacagcacactagatgatgaggctattgctaggcaactgcagcttgaagaa
gattcagagctggagagacagctgcatgaagatgaagaatttgctagaactctggccatg
ttggatgaaacaccacagaagaaaaagggtcggaaaaacacagaaggagagcaaacagta
ctgagcatcaacagcagccctaatacaacagcaggatacaagcagacagaaagagtgaaa
gcaacagacttagctggtgcagccaagaattactctgcgaagccacaaactaaagctgaa
cagtcggagggttcttgtttacccccacaatcatctgatggtaaaaaagaagagatggct
gaaaaggaaagaggtgctcaaaattcagtatcaagaggaaaagcagcttcagggaaagaa
gagaagaaaacaccaaagaaggagaaagtttctcccaagaagactgagtctataagtcct
gaggattctgaaaagaagcgaaacaattaccaagcttaccgaagcttccttaatcgcgag
ggtcccaaagcactggggtccaaagagatacctcagggagctgagaactgcttggaaggg
ctgacatttgtaattacgggagttctggagtgcattgagagagatgaggccaagtctctg
attgagcgttacggaggaaaggtaactggcaatgtcagcaagaaaacaaattacctggtg
atgggccgggactgcggccagtccaagtgtgagaaggcatccactttaggtacaaaaatt
attgatgaagatggtctatttgatcttattcgagctatgccaggcaaaaagtcaaaatat
gagctggcagctgaaacagaggcaaagaaagtggagtcaaaacccaaaaagacaccagag
aaagctgaagctgggaaaaggaattttagcccctacaaaagggaagctaataataaaaaa
tacaagtctactcctgaaaaaggagaaaccatcagatctgtcaagaaagaaaccactgct
gttcgaaaacttacggacttcaaacgtcagactgtagaggagaaagaggccccaaaacct
aagggaaacttggtttctgaggttaatgaagatggcacagagaaattgctgtgggtagat
aaatataagcctgtatctcttaaggcaattattggacagcagggtgagcaaagctgtgcc
aataaactgctccgatggctcagaaactggcacaagaacaccttggaagatggacaagca
aaacctggtaaaactggaagcaaagatgatgggacaggctttaaagcagcattactttct
ggtccacctggagttggtaaaactactacagctgctttggtttgtaaggagctgggctat
agctacgtggagctgaatgccagcgacactcgcagcaagaacagtctgaaagaagtcgtt
gctgaatcacttaacaacaccagcatcaaagacttctgttctggtgcatcttcatcagtt
agcgggaagcatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacaga
ggagggattcaggagctgattgctttgatccggcacacgaaggttcccatcatttgcatg
tgcaacgatcgcaaccaccccaagatgcgctccttggtccactactgcttggatcttcgt
tttcagagacctcggctagaacagatcaaaggtgccatgatgtctattgcatttaaagaa
ggtttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcaggacatc
agacaggttttacataatcttaatatgtggtgtgcaaaagacaaatcactgacttatgat
gaggctaaaacagatgccagcagagccaaaaaggacatcaaactgggcccctttgatgtg
gtccggaaggtttttgctactggagaggaggctgcccgtatgtctcttatagacaaatca
gatcttttcttccatgattattcactagcacctctctttgtccaagagaactatgtgcat
gtgaaaccagctgctgctgggggtaatttaaaaaagcacttggtgctcttgagtagagca
gctgatagtatatgtgatggtgatatagtggacagacagattcgtagcaagcagaactgg
aatcttcttccaacacaggctatttatgcaagtgttctcccaggggagctgatgaggggt
tacatgtcccagtttcctgtctttcccagctggctggggaaattttcatccacaggcaaa
cacgatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacatgcaag
aggacagtaaatatggaatatttgtcatatttgcgggatgcacttgtccagcccttgaga
gactttggagcagatggtgtacaacaagctataacatttatggactcctactgcttgatg
aaagaagatgttgaaaatatcatggaaataagcacgtggggaggcaaacccagtcctttt
tcaaagctggatcccaaggtcaaagcagctttcacacgtgcctacaacaaagaggcacat
ctgactccatattcacttagtgctgtcaaggcatccaaaaggcagtcgggatctgctgcg
accttagagctgagtgaagacttgactgtggaagagatccagtctgatgaggatgagcag
gatactgttgacagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagctgcca
aaaagagagaaaaatgaagaaacaacaaaaaaagaagggaagagaaaagagaaaacaaga
catttagagtaa
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integrated database retrieval system
