Geospiza fortis (medium ground-finch): 102038783
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Entry
102038783 CDS
T03755
Symbol
PDZRN3
Name
(RefSeq) PDZ domain containing ring finger 3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102038783 (PDZRN3)
Enzymes [BR:
gfr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102038783 (PDZRN3)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
102038783 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
102038783
NCBI-ProteinID:
XP_005420213
UniProt:
A0A6I9HG39
LinkDB
All DBs
Position
Un
AA seq
773 aa
AA seq
DB search
MGCSLCTLQKPEEQYKLLYEVCQVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAK
AHEPQLVDVGTQTDITFEHIMALSKMGSPSPPVPGLDPYLLPEDHPSVHEYYDPNDYMGG
IHQEMDRDELELEEVDLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLR
EGDRIIQINGIEVQNREEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHM
DMLEEQHHQAMQFTASMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSE
QENNGDDHTTSSNTLGSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECER
FRELLELKCQVKSANPYSLYYHNSTLEMSKSDQESVDRELEMLNEELRNIELECLNIVRA
HKMQQLKEQYREPWMLHNSSFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCR
STPLTLEISPDNSLRRTAEGVGCQGNEGAVAYNISQKNLFAGSESHESSAGKCHASAKDP
DPGKQLESKERKGSDGSKSPTHSQKPYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSA
VEYAQSQMSLVSMCKDLASGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEE
RSGMTTDDDAISEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKK
EMNIIELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgggatgcagtttgtgcactctgcagaagccagaagagcagtacaagttgctgtatgaa
gtttgtcaggtcaatgggaaggatttatccaaagccacccacgagcaggcggtggaggca
ttcaagacagccaaggagcccatcgtggtgcaggtgctgaggagggcccctcgtgccaag
gcccacgagccccagctggtggatgtgggcacccagaccgacatcaccttcgagcacatc
atggccctcagcaagatgggctcgcccagcccgcccgtccccggcctggacccctacctg
ctgcccgaagaccatccatccgtgcatgaatactacgacccaaatgactacatgggagga
attcatcaagaaatggaccgggatgagttggaattagaggaagtggatttacacagagtg
aacagccaggacaagcttggcctcactgtctgttacagaacggatgatgaagatgacatg
ggtatttatgtgagtgagattgatcccaacagcatcgcagcgaaggacgggcggctgcgg
gaaggggatcgcatcatccagatcaatggcatcgaggtgcagaaccgagaggaagctgtg
gcacttctctccagtgaggagagcaagaatatctccttgcttgtggcaagaccagaaatt
cagctggatgaaggatggatggatgatgacagaaatgattttctggatgacttgcacatg
gacatgttagaggaacagcaccaccaggcaatgcaatttactgccagcatgcttcagcag
aagaagcacgaggaggatggaggcaccacagacacagccacgattttgtccaaccagcac
gagaaggacagcggcgtggggcgcacggacgacagcactcgcaacgacgagagctcagag
caggagaacaatggggacgatcacaccacctcctccaacaccttggggagccagaagaag
ctgacctacagccacgacaccctggggagtggggacatgcagttcagcaacgagtcgttc
atctcagctgactgcaccgatgtcgacttcctcggcatccccgtggatgagtgcgagcgg
ttccgggagctgctggagctgaagtgccaggtgaagtctgccaacccctacagcctgtac
taccataacagcaccctggagatgagcaaaagcgaccaagagagcgtggacagggagctg
gagatgctcaacgaggagctgcgcaacatcgagctggagtgcctgaacatcgtgcgggcc
cacaagatgcagcagctgaaggagcagtaccgggagccctggatgctgcacaacagcagc
ttccgaaactacaacaccagcattgatgtgcgcaggcacgagctctcggacatcaccgag
ctgcctgagaagtctgacaaggacagctccagtgcctacaacacgggcgagagctgccgg
agcacgccgctgacgctggagatctcccccgacaattccctgcgcagaaccgccgaaggc
gtcggctgccaaggcaacgagggggcagtggcctataatatctcccagaagaatttgttt
gctggctctgagagccatgaatctagcgctggtaagtgccacgcctccgctaaagatcct
gaccctggcaagcagctggagagcaaggagaggaaaggcagcgatggcagcaaaagcccc
actcacagtcagaagccctacgtgtccccctaccaccactctccctacaaacacgctcac
atccctgcccacgcccagcactaccagagctacatgcagctgatccagcagaaatccgcc
gtggagtacgcccagagccagatgagcctggtgagtatgtgcaaggacttggcctcaggg
cagagcgagcccaggatggagtggaaggtcaaggtcaggagcgacgggacgcgctacatc
accaagaggccagtcagggacaggctgctgagggaacgggccataaagatcaaggaggag
cgcagtgggatgaccacggatgacgatgccatcagtgagatgaagatgggccggtactgg
agcaaggaggagaggaagcagcacttggtgaaagccaaggagcagaggaggcggcgggag
ttcatgatgcagagcaggttagagtgcttgaaggagcagcaaggtgcagaggagaagaag
gagatgaacatcattgaactgagccacaaaaaaatgatgaagaagagaaataaaaaaata
tttgacaattggatgacgatccaagaactgctaacccacggaacaaagtcaccggacggc
acgcgggtgtacaattccttcctgtcagtgactactgtataa
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