Geospiza fortis (medium ground-finch): 102039118
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Entry
102039118 CDS
T03755
Symbol
SPATA13
Name
(RefSeq) spermatogenesis associated 13
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
102039118 (SPATA13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102039118 (SPATA13)
Membrane trafficking [BR:
gfr04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
102039118 (SPATA13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
PH
SH3_1
SH3_9
SH3_2
RHG20_PH
PH_5
Motif
Other DBs
NCBI-GeneID:
102039118
NCBI-ProteinID:
XP_005417737
LinkDB
All DBs
Position
Un
AA seq
1272 aa
AA seq
DB search
MTTFPNGCGNGTTVTCIVMDNKEPQNQTTCASHNGGHSTSNSVEEEFQEDKLSPSKIMRF
FTTPRKRANSSSDRPRSLVLMGNSSTWNAFSSIRKMGSFKKLKSSVQQGTQTRECSDIVN
DNSIGRHGSNGAVVQVQTNRYSYSGPLHDFQNAVDGLASDCSDVEESDESFLRNTHRSRS
IRRAYGAGRINLLDTDKVQSHHNCVRPTSPVIAEPKICEILVKDSENNRIIYWRSKSSDN
LNFLKKSSFKRKSTSNLADLKVANEKQMPARTMSVPSADFDKSDGNPERRSKRWKSPIRA
KDFDRVLKLVSNVTDVARKKDGPKNVAPSLSELSQRTRSNSRLHDDYSRRVSSSTDHDRK
RCTSSVSSPDSSLPGTPCLQSPVIAQDKKAEMNVAVTEDKSPRTSSGIPDSDSFSPTLDD
MSPFPNEVFYSDSDELKATQQCTDEAENLYVPVRPTTPKPQSPTAGKVKCSMNFQCPNHH
STLSLSSSESEERVEVPGLKLGRNPVCFQDSVKTVYYDDGNEDSGISSHSQLSLNLASGT
EEKKEEVVSDDHWKRSISQEEEKADSQKITPRKWGSGKRSRPRPLSDYGQMSIRSFSIPE
DAVAVESQNTDCTDGENQPGLASLGSGIQSNTVGYHRGRKRRPISVIGGVNFYGDDQVEE
RENLLTQPVARPPVPAHKVPPYKAVSARFRPLTFSQSTPIGLDRVGRRRQMRTSNVAADG
GTESSALVDDNGSEEDYSYEELCQAAPRYLQPGGEQLAINELISDGTIVYAEALWDHVTM
DDQELGFKAGDVIRVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEEVPENCSNIQDEE
QDSDISKHRQKIAENRDQMRTNVIQEIMKTERVYIKHLKDICEGYIRQCRKHTGMFTTAQ
LSTIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPSA
CIELSRLMKQGKYRHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEH
SDYSNIKAAYEAMKNVACLINERKRRLESIDKIARWQVSIVDWEGPDVLARSSELIHSGE
LTKISKQGKSQQRTFFLFDHQLVFCKKDLLRRDILYYKDRIDMDETEIVDAEDGRDKDFN
ISVKNAFKIINRTTEEIHLFCAKKQEDKKRWMEACENERRRVREDKEMGMEISENQKKQA
MLNARKSRQGKIKGGYNGCPLPPLHQTLHPLHQRHITVPTSVPQQQVFALAEPKRKPSLF
WHTFNKLTPFKK
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttccgaatggctgtggaaatggcaccaccgttacttgtatagttatggat
aataaagagccccaaaaccagactacctgtgccagtcataatgggggacacagcaccagc
aacagtgttgaggaggaatttcaagaggacaagctcagcccttccaaaatcatgcgcttt
ttcaccacccctcggaaacgggctaattccagctctgacaggcctcgttcactggttttg
atgggcaactcatccacgtggaatgccttttcttctatcagaaagatgggatctttcaag
aagttgaaatcttcagttcagcaaggaactcaaacaagggaatgctcagacatcgtaaat
gacaacagcataggcagacatggttcaaatggagcagtggtgcaagttcagactaacagg
tattcctattcggggcctctacatgatttccagaatgcagtggatggtttggcttctgac
tgctctgatgtggaggagagcgatgagtccttcctgaggaacactcatcgctcacgcagc
atcaggcgggcttacggtgctggccgcatcaacttgttagacacagataaagttcagagt
caccacaactgtgttaggccaacatcacctgtcattgcagagccaaagatctgtgaaatt
ttggtgaaagactccgaaaacaacaggatcatttactggagaagcaaaagttcagataat
ttgaactttctgaagaaaagctcattcaagcggaagtccacctcaaaccttgctgatctg
aaggttgcaaatgaaaaacagatgccggcaaggactatgagtgttccttctgctgacttt
gacaaaagtgatggaaaccctgagaggcgatccaagcgatggaagagccctatcagagca
aaggattttgatcgagttttgaaactcgtcagtaacgttacagatgttgcaaggaagaag
gatggccccaagaacgtggctccttctctcagtgagctgtcccagagaacaagatcaaac
agcaggctgcacgatgactactcccgcagggtttccagcagcacggaccatgacaggaag
agatgcacctcctcagtatccagtccagactcttccttgccaggaacaccttgcctgcaa
agccctgtgattgctcaggataaaaaggctgaaatgaatgtagctgtcactgaggataaa
agccccaggacgtcatcaggtatcccagactctgatagcttttcacctactctggatgac
atgagtccatttcccaatgaagtcttttattcagactcagatgaactaaaagctactcag
cagtgtacagatgaagccgaaaacctttatgttcctgtcaggccaactactccaaagcct
caaagtccaactgcggggaaggtcaagtgcagtatgaatttccagtgtccaaaccatcac
agcacgttgtcactgagctcatcagagagcgaggagagagttgaggtaccggggctgaag
ctgggcaggaatcctgtttgctttcaggactcagtgaaaactgtgtattatgatgatgga
aatgaagacagtggcataagcagccactctcagctgagcctcaatttagcctctggtact
gaagagaaaaaggaagaggttgtttctgatgaccactggaagaggtccatatcccaggag
gaagaaaaggcagactcacaaaagatcacacccaggaaatggggctctggaaaaagatcc
cggcccagacctctctcagactatggccaaatgtcaatccgaagtttctctataccagaa
gatgcagttgcagtggagtctcagaacacagactgcacagatggagaaaatcagccggga
ctggcgtcccttggatctgggatccaaagcaatactgtaggctaccacagagggagaaaa
agaagacccatctccgtaataggtggggtcaatttctatggagacgatcaagtagaagag
agagaaaatctgctgacacaacctgtggcacggccacccgttccagcacacaaggtgccc
ccgtacaaggctgtttcagccaggttccggccactcaccttctcacaaagtacccccatc
ggtctggaccgtgtgggacggaggcggcagatgagaacatctaatgttgctgcagatggt
gggactgaatcttcagccttagtggatgacaatggcagcgaggaagattacagctacgag
gagctctgccaagctgctcccaggtacctgcagcccggaggggaacagctagcaattaat
gagctgataagtgatggcaccatcgtctatgcagaggctctctgggaccatgtcactatg
gatgatcaagagctgggcttcaaagctggagatgtcattagagttctagaagcttccaat
aaagactggtggtggggaagaaatgaggacaaggaggcctggtttccagctagctttgtc
aggctgcgagttaatcaggaagaagtgccagaaaattgtagtaatatccaggatgaagaa
caagattcagatattagcaagcatcgccagaaaatagctgaaaacagggatcagatgaga
accaacgttatacaggaaattatgaaaacagaacgagtctatatcaagcatctcaaggac
atctgtgagggttacattcggcagtgtcgcaaacatacaggaatgttcaccacagctcag
ctaagcaccatttttggaaatattgaagatatttacaagttccaaaggaagtttctgaag
gatcttgagaaacagtacaacaaagaggaacctcatctaagtgaaatagggtcatgtttt
cttcaacatcaagaaggctttgctatttattcagagtattgtaacaaccatcccagtgcc
tgcattgagctctccagactgatgaagcagggcaaataccgccacttcttcgaggcctgt
cgcttgcttcagcagatgattgacattgccattgatggttttcttctcacacctgttcag
aaaatctgcaaatatcctctgcagcttgcagaattgctcaaatacaccactcaggagcac
agtgattatagcaacataaaagctgcatatgaggccatgaagaatgtggcatgcctaatc
aacgaacgaaaacggagactagaaagcatagacaagattgcccgttggcaagtctctatc
gtggactgggagggaccagatgtgctagccagaagctcagaactgatccactcaggagag
ctgaccaaaatatcaaaacaaggcaaaagccagcagaggactttcttcctttttgaccat
cagcttgtgttctgtaagaaggacttgctgagaagggacattttgtattacaaggatcgt
attgacatggacgagacagaaattgtggacgctgaagatggcagagacaaagattttaac
atcagtgtcaagaatgcttttaagataataaacagaacaacagaagagattcatttgttc
tgtgcaaaaaaacaggaggataaaaagagatggatggaggcgtgtgaaaatgaaaggaga
agagttcgagaagataaggaaatgggtatggaaatctcagaaaaccagaagaaacaagcc
atgctgaatgcccgtaagtcaaggcaaggaaaaattaaaggtggctataatgggtgtcct
ctgcctcctctacaccaaacccttcatccccttcaccagcgacacatcaccgtgcctacc
agcgtcccacagcagcaggtctttgctctggcagaacccaagcggaagccatctctcttc
tggcataccttcaacaaactcactccctttaaaaagtga
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integrated database retrieval system
