Geospiza fortis (medium ground-finch): 102039142
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Entry
102039142 CDS
T03755
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102039142 (HTT)
04131 Membrane trafficking [BR:
gfr04131
]
102039142 (HTT)
03029 Mitochondrial biogenesis [BR:
gfr03029
]
102039142 (HTT)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102039142 (HTT)
Membrane trafficking [BR:
gfr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102039142 (HTT)
Mitochondrial biogenesis [BR:
gfr03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
102039142 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
102039142
NCBI-ProteinID:
XP_014163991
LinkDB
All DBs
Position
Un
AA seq
2918 aa
AA seq
DB search
PGPPPGEPLQRPKKELAATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
EDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPKIMAAFGNFANDNEIKVLLKAFI
ANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNVLLGLLVPVEDDRPTLLILGVLL
TLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQLIQVYELTLHYTQHQDHNVVTGA
LELLQQLFRTPPPELLHALTACGGIAQVSVSKDEPASRSRSGSIVELIAGGGSSCSPVLA
RKHKGKVLLGEEEGLDDDSETRSDVSSASFAASVKGEITSDLASSSGVSTAGSVGSSAAD
ATGHDIITEQPRSQHTLQSEPVELPSCDLTSAAAEGEEEEMLSRSSSQISAVQSDATMDL
NDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGAEGQYSGMQIGQLQDEEDEAANI
LQDDSSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDRFTSKEDATDAGDHENKPSRVKG
DIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRDVRVSVKALAVSCVGAAVALHPE
SFFSKLYKTPLEAMGEEYEEQYVSDVLNYIDHGDPQIRGATAILCGTIVNSILIKSRFDV
EKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCSSSYSELGL
QLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEGKTESLHRGIHHYTGLLKLQERV
LENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQADPVVAVARDQSSVYLKLLMH
ETQPPSHFAVSTITRAYRGYNMLQSPTDVTMENNLSRVIAAISHALTISTTRALTFGCCE
ALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIGMAGLVLSLLSSAWFPLDLSAHQ
DALILTGNLLAASAPKCLKNPWSAEEDANQGAAKQEEPWPALSDRALVTLVEQLFSHLLK
VINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGKERESVEQASVPMSPKKSGEAS
PASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKATHANYKVTLDLQNTNEKFGCFL
RSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQVFIGFVLKQFEYI
EVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPAL
QPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDK
WKRLSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKT
MASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNTS
TPEDRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLM
CLIHIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILL
LVNYTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALIL
FCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRC
ENLAAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLA
ATLQNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHP
LDGEDQPPLENVVLDKDWYVSLVRSQCYIRSDSALLEGAELVNRIPQPDLNSFMTSKEFN
LSLLAPCLSLGMNEISREQKSSLFETARRVTLDHVSSAVQNLPANHQVFQPLLPTEPSAY
WKKLSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPEKEGDILKFVVMSVEALS
WHLVHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVE
PGNQLLSPERKNTSKPLSEGESDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSI
PAFLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKE
IFKEFIYRINTLGWISRTQFEETWATLLGVLVTQPIVIDQEENQQEEDTERTQINVLAVQ
AITSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSK
RDNIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWL
GNNITPLREEEWGEDEEDENDVPAPSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWIL
PSNPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIP
ATCKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIP
IISEYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVS
GSDESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLT
CMYTGKEKISPSRIPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFL
DDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFT
QRTPVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQID
EELDRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
8757 nt
NT seq
+upstream
nt +downstream
nt
cccggcccccccccgggggagccgctccagagaccaaagaaagaacttgcagctaccaag
aaagatcgagtgaatcactgtctaacaatatgtgaaaacatagttgctcagtcattaagg
aattccccagaatttcagaagctgctgggcattgctatggagctctttctcctctgcagt
gaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagttattaaa
gctttgatggattccaatcttcccaggttacagttagagctctataaagagattaaaaag
aatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcccatcta
gttcggcctcagaagtgcaggccatacctggtgaaccttttaccctgtctgacacggatc
agtaagagacccgaggaatcggtgcaggagacgctggctgcagcaatacccaaaatcatg
gcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggctttcata
gctaatcttaaatccagttcccccactatccgtcgaacagcagcaggatcagcagtgagc
atctgccaacattcacgaagaacacagtatttttatgcctggttattgaatgtgctttta
ggcttgttggttcctgtagaagatgatcgtcctactcttttaattttgggtgttttactg
acactgaggtatctcatacctttattgcaacaacaagtaaaggataccagcctgaaaggc
agttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaacttatacag
gtttatgaactgactctgcactatacccagcatcaggaccataatgttgtgactggagct
ttagaattgctgcagcagctcttcagaactcccccccctgaactgctccatgccctgact
gcctgtgggggcattgctcaggtcagtgtatccaaagatgaacctgccagcaggagccgc
agcgggagcattgtggaacttatagctggaggggggtcttcatgcagccctgttcttgca
agaaagcataaaggtaaagtacttcttggtgaagaagaaggcttggatgatgattctgaa
acccgatctgatgtcagctctgcatcatttgcagcttctgtgaagggtgagataaccagt
gatctggcttcttcatcaggagtgtcaacagctgggtcagtggggagctcagctgcggat
gccacgggccatgacatcatcacggagcagccgcgctcgcagcacacgctgcagtcagag
cccgtggagctgcccagctgtgacctgacaagcgcagctgctgaaggggaggaggaggaa
atgctcagtcggagctccagccagatcagtgctgtccagtcagatgccactatggatttg
aatgatggcacacaggcttcctcaccaattagtgatagctctcagaccactacagaaggt
ccagactctgctgtaaccccttcagacagctctgaaattgttttggagggtgctgaagga
cagtattctggaatgcagattgggcagctgcaggatgaggaagatgaagctgcaaatatt
ctccaagatgattcgtcagagtccttcagaaattcttctcttgctcttcaacagtctcac
ctgctgaagaccatgagccatagcaggcagccctctgatagcagcgtggatcgatttaca
tccaaagaggatgcaacagatgctggtgatcacgagaacaagccctccagggtaaagggg
gacattgggcactacactgacagagactgtgctcctttggtgcactgcgtcaggctgctg
tcggcctccttcctgctcactggggacaaaggagctttagttcctgatagagatgtgaga
gtcagtgtaaaagccttggcagtaagttgtgttggagcagctgttgcacttcaccctgag
tctttcttcagcaaactgtataaaacacctctggaggcaatgggagaagagtatgaggag
caatatgtgtcggatgttctgaactacattgaccatggggatccccagattagaggagct
actgccattctctgtggaacaattgtcaactccattctaattaaatctcgctttgatgtg
gaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgatagactgc
atacctctgttacagaaaacattgaaagatgagtcctctgttacatgcaaactggcatgt
acagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgagctaggtttg
caattgattgttgacctccttgctctgaagaacagctcatattggcttgtaaggacagaa
cttctggaaacacttgcagaggtagattttcggctagtcaacttcttggaaggaaagact
gagagcttgcacagaggtattcatcattatactggtctattaaagcttcaggagagagta
cttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacatgtggct
gcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaaggacaggct
gacccagtggtggcagtggcacgagaccaaagcagtgtctacctgaaactcctcatgcat
gagacacagcccccatctcactttgcagtgagcactatcaccagagcatacagaggttac
aacatgctgcaaagtccaacagatgtcactatggaaaacaacctttcaagggttatagca
gcaatttcccatgccctgacaatatccactacaagagcacttacgtttggctgctgtgaa
gctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatggcactgt
ggtgtttctcaaccaagttcttcagatgaagctcagaagggctgcaccattggtatggct
ggcttggtcctgtctctcctttcatcagcttggttcccactggacctctcagcacatcag
gatgctttgattttgactgggaacttgcttgcagcaagtgctcccaagtgcttaaagaat
ccctggagtgctgaagaagatgcaaaccaaggtgctgcaaagcaggaggagccctggcca
gctctgtcagatcgagctttggtcactttagtagaacagctcttctctcatctgctgaag
gtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagtaaaggca
gcattaccttctctcacaaacccaccttctcttagtccgattcggagaaaggggaaggag
agggagtctgtggaacaggcatctgtgcccatgagccctaagaagagtggtgaagcaagt
ccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatcttcagta
ggaagcttttatcatcttccatcatacctgaagttatatgatgtcttgaaagcaacccat
gctaattataaggttactttggatctccagaacacaaatgagaagtttggatgtttcttg
cggtctgccttagatgttctctctcaaatcttggaacttgctactcttcaggacattgga
aagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagagccaacaatg
gcaacagtgtgtgtacagcaggtgtttattggatttgtgctaaagcagtttgaatacatt
gaagtaggacagttcagggagtctgaagcaattattcctaatatcttctttttcctggtg
ttgctgtcttatgagcgatatcattccaaacaaataattggaattcccaagatcattcag
ctgtgtgatggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctg
caacccattgttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaa
gagctggaaactcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccat
caggtgctagaaatgttcatcttggttttgcaacagtgtcataaagaaaatgaagacaaa
tggaagagattgtctcggcaaatagctgacatcattctcccaatgcttgcaaaacaacag
atgcatatagactctcatgatgctttgggagtattgaacactttgtttgaaattttggcc
ccttcatcccttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaaca
atggcatcagtgagcactgtccagctgtggatttctggaattttagctatccttagagtt
ctgatttcacagtcaacagaagacatcgttctatcccgtatacaagagctttccttctca
ccatatttgatttcatgtcaagcaatcaacagactgagatgtggagaaaataacacatcc
acaccagaggatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattttcc
agattcttgctacaactggttggcattctactggaagatattgtcaccaagcaattaaaa
gtggacatgaatgagcaacaacatactttctactgccaggagctgggcacactgcttatg
tgcttaatacatatcttcaaatcagggatgtttagaagaatcacagctgcagccaccaga
ctttttacaggagatggatctgatggtagtttctacacacttgaaagtctgagtgacctt
gttcagtccatgattcccactcatccttctttagttctcctctggtgtcacattttgctt
cttgtcaattataccaactacaactggtggtcagaagtgcatcaaaccccaaagagacac
agcctttctactacaaaattgctgagccctcatatatctggagacagtgatgaatccgac
ctggaatccaagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctc
ttctgtgactatgtttgtcaaaacctacatgattcagagcacctgacttggcttattgtg
aatcatgttcaagacttgattaatctgtcccatgagcctccagtacaagattttatcagt
gctgttcacaggaattcagcagccagtggtctcttcatccaggccattcagtcacgctgt
gagaatcttgcagctcccacaaccctgaagaagactttgcagtgcttggagggaatccac
ctgagccagtcgggggcagtgctgacgctgtacgtggacaagctgctgtgcactcccttc
cgcgtgctggcgcgcatggtggacaccctggcctgccgccgcgtggagatgctgctggca
gcaactctgcagaacagcattgctcagttaccagttgaagaactggatagaattcaggag
taccttcaaaacagcggattagcagcaagacaccaaagactctactcactcctagatagg
tttcgtctcatggtagctccagacacaaccagtccttcacctctggtcacctcacaccca
ttggatggagaagatcaaccacctttagagaatgtagttttagacaaagactggtacgtg
tccctagtgcggtcacagtgttacatcaggtctgactcagcacttctggaaggagcagag
ctggtaaataggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaac
ctaagcttgttagcaccttgtttaagccttggcatgaatgagatctcaagggagcagaag
agcagcctctttgaaacagctcggagggtaactctggaccatgtgtcttctgctgtacaa
aaccttccagccaaccaccaggtttttcagccactattgccaactgagccatcagcctac
tggaaaaaactaagcgacatctttggagatgaggtgatgtatcagtctatgatgacactt
tgtcgtgcactggctcagtatttgttgttactctcaaaactaccagctggtctccgtgtt
cctcctgaaaaagagggtgatatcctgaaattcgtagtgatgtcagtagaggcactatca
tggcatttagtgcatgaccagattccattaagtgtagatcttcaagctggtctggattgt
tgctgtctgacactacagcagcctagtctctggaatttgctgtcttctgcagctcatgtg
acatatgcttgctccttgattaattgcattagattcatcatagaagcagttgctgtggaa
cctggtaatcaacttctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggg
gaaagtgattcaaatgtacagaaaacaaaacacattattgcagcatgtgaaatgatagct
gagatggtggaatgcttgcagactgtcttgtcactggggcacaaaagaaacagcagcatc
cctgcatttctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctcta
gtgaacagctacaccagagtacctcccttggtctggaaattaggctggtcaccaaagcct
tcaggtgactttggtacagtttttcctgaaatcccagtagaatttcttcaagaaaaggaa
atctttaaggagttcatctatcgcattaatacacttgggtggatcagccgtactcagttt
gaagagacttgggcaactttgcttggtgtgcttgtaactcagcccattgtaatagaccag
gaggagaaccagcaagaggaagatacagagaggacccagatcaatgttctggcagtgcaa
gccataacctccctggtgctgagtgcaatgaccattcctgttgcaggcaatccagcagtc
agctgcttggagcagcagccccgcaacaaagctttaaaagctctggacacaaggtttggg
aggaagctgagtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaag
agagataatattgctactcatcacttataccaagcttgggaccctgttccatcactttct
cctgctactacaggtgctctaatcagccatgaaaaactcttactgcagatcaatactgaa
cgagaaataggagatatggattataaattgggacaggtctctatacactccatatggtta
ggaaataatatcactccactaagagaagaagagtggggtgaggatgaagaagatgagaac
gatgtacctgctccttcctcaccacctacctctcctatcaacaccaggaaacaccgggct
ggtgtggatatccattcttgttctcagttcttgcttgagctgtacagtcagtggatattg
ccatccaaccccagcaagagaacaccagtgattctgatcagtgaagtggtgcgatcactt
ctggcagtgtcagacttatttacagaaaggaatcagtttgagatgatgtacacaacactg
acagagttgagaaaggtgcatccatcagaagatgagattcttgtacagtatttgatacca
gctacttgtaaagctgctgctgttcttggaatggataaagctgtggctgaaccagtgagt
cgactgctggaatcaaccctgaggagcacccacatgccaagtcgcattggagctctgcat
ggaattctttacatccttgagtgtgacttgctggatgagacagcaaagcagctcattcca
attatcagcgagtatctgctctccaatttgagaggagtagcacattgtgtgaatatccat
aaccaagagcacattttggtcatgtgtgcagctgctttctatttgattgagaattaccca
cttgatgtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtct
ggaagtgatgaatcaacaccatccattatttatcactgtgtcctgagaggattggaacga
ctcctcctttcagagcagctttccaggctggacagtgagtccctggttaagctgagtgtt
gacagggtgaatgtgcagagcccccacagagcaatggcagccctgggattgatgctgact
tgtatgtacacaggaaaggaaaaaatcagccccagccgtatcccagatgcaaatcctggt
gctcctgacagtgaatctgtgattgttgctatggaacgagtatctgtcctttttgatagg
atcaggaagggatttccctttgaagctcgagtagtggctcggattcttccacagttcctt
gatgattttttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaat
cagcagccatacccacaattcatggcaacagtagtttataaggtgttccagacactgcat
agcactggacaatcctccatggtccgtgactgggtgatgctctccctctccaatttcaca
caaagaacacctgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttcc
accagtcaatggatttcagcaattcttccacatattattagcagaatggggaaatcagag
caggtggatgttaacatcttctgtttggtggccatagacttctaccgacaccagatcgat
gaggagctggatcggagagccttccagtcggtgtttgaggtggtggcatctccaggaacc
ccataccaccgcctcctgacctgtttgcaaaatgtccacaaggtcacagcatgctga
DBGET
integrated database retrieval system
