Geospiza fortis (medium ground-finch): 102039507
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Entry
102039507 CDS
T03755
Symbol
TAF1C
Name
(RefSeq) TATA-box binding protein associated factor, RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102039507 (TAF1C)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
102039507 (TAF1C)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
102039507
NCBI-ProteinID:
XP_005431035
LinkDB
All DBs
Position
Un
AA seq
661 aa
AA seq
DB search
MYPREEVFLREGLGTACRHEGILTGNNVITLSQTPLTSSPDSPDITILLGHSCWIPSPAP
QDILYHRSGLCRKLRAGKSAATLDFAKQLGHFFVDHPEDAFGSLGHLLHKNFYLGNAKLK
RPARNSTIRMTALVEDIDRLEARRGCPRQHLASRLRWFSHLCRDWLFEVPLGLLADCLHE
ELAQQWSNLLFDDSLTGGALAWLPPEDGQTPVGRLVHPGGQAMNHLYFQDVVLEELPYAR
GSPAQFELSERIRQVAAARVNGQDFVGVRSDYHCGVWRVPGKTGAVPAPLQVIRTDVPAS
CLTVSPHLPGELSVCTESGTVYLWSVETGLQQLRHDPQTMFFRDHSPWRWSDFTAHPRVL
SCADRTGLQCLDARAPKRCHVELFKVGEEAGCQQGERVVLPMYLGRAHPSQYLVTTQFSM
YVLDERLPLVPVLKWAHMMKAPPLFAHLIPGKPGRSHKVLLGASRTQELLLLQYRGKRSS
SRGGSQSACQLVGTPQKLHSITGCLQHLPTQLPHCHQLLQQRLSAPAAGLAAMLQEDGPR
KSMLIFQLSEAGDVFCQRLIHKAAQPPAPPSKDEATTAPGSSPLFEAPASSPHGLGSEGE
EEEEQTFYLPNLEVIFHEEEEEEDMGTPAPVEEAELLQEPWATEWVRTMLTSTFGQSPRR
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtatcctagagaggaggtgttcctcagagagggtctgggcaccgcctgcaggcacgag
ggcatcttgactggaaacaatgtcatcacactttcccaaactcccctgacgtcatcccca
gactccccggacatcaccatcctcctgggccatagctgctggatcccctcgcctgcgcct
caggacatcttgtaccaccgcagcggcctgtgcaggaagctccgggcaggcaagtctgca
gctactctggacttcgccaagcagctgggccatttctttgtggatcacccagaagatgct
tttggctccctggggcatctgctgcacaagaacttctacctgggaaacgccaagctgaag
agaccagcccggaacagcaccattcggatgacagccctggtggaggacatcgaccgcctg
gaggcccgacgcggctgcccccgacagcacttggcctcccgcctgcgctggttctcccac
ctctgtcgtgactggctcttcgaggtgccgctggggctgctggcagactgcctgcacgag
gagctggcacagcagtggtccaacctgctctttgatgacagcctcactggcggggcactg
gcctggttgccccctgaagatgggcagacacctgtgggccgcctggtgcatcctggaggg
caggccatgaaccacctctatttccaggatgtggtgctggaggagctgccctacgcccgg
ggctccccagcacagtttgagctcagcgagcgcatccggcaagtggctgcagcccgtgta
aatgggcaagattttgttggggttcgctcagactatcactgtggtgtttggagggtgccg
ggcaagacaggagcagttcccgccccgctgcaggtgatccgcactgatgtgcctgcctcc
tgcctcactgtcagccctcaccttcccggggagctgtctgtctgcaccgagagcgggacc
gtctacctctggagcgttgagactgggctgcagcagctgcgccatgacccccagaccatg
ttttttcgggaccattcaccctggcgctggagtgacttcactgcccacccacgagtgctc
agctgtgctgaccgcacaggcctgcagtgcctggatgcccgagcccccaagaggtgccac
gtcgaactgttcaaggtgggcgaggaagcaggctgccagcagggcgagcgtgtggtgctg
cccatgtacctgggcagggctcacccctcacagtaccttgtcaccacccagttctccatg
tatgtgctggacgagcggttgccactcgtgcctgttctgaagtgggcacacatgatgaag
gcccctccactctttgctcacctgataccagggaaacctgggaggagccacaaggtgctg
cttggtgcatcccgcacgcaggagctgttgcttttgcaataccggggtaagagatcaagc
tccagggggggcagccagtcggcctgtcagctggtggggactccacagaagctgcacagc
atcacagggtgcctgcagcacctgcccacccagctcccacactgccaccagctgctccag
cagcgcctctcagcccctgcagcagggctggctgccatgctgcaggaggatggaccccgc
aagtccatgttgattttccagctctctgaggctggggatgtcttctgccagaggctgatc
cacaaggcagcacagcctcctgcacccccatcgaaggatgaggccacaacagctcctggc
tcttccccccttttcgaggctccagccagcagcccacatggcttgggcagtgagggagaa
gaggaggaagagcaaacattctacttgcccaacctggaggtgattttccatgaggaggag
gaggaggaagacatgggcacaccagcacccgtggaggaagctgaactactgcaggagccc
tgggcaacggagtgggtccgcaccatgcttacttccaccttcgggcaaagtccgcggcgg
acatga
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