Geospiza fortis (medium ground-finch): 102039606
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Entry
102039606 CDS
T03755
Symbol
FAM188B
Name
(RefSeq) family with sequence similarity 188 member B
KO
K22647
ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:
3.4.19.12
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102039606 (FAM188B)
Enzymes [BR:
gfr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
102039606 (FAM188B)
Ubiquitin system [BR:
gfr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
MINDY
102039606 (FAM188B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MINDY-3_4_CD
NRIP1_repr_3
Motif
Other DBs
NCBI-GeneID:
102039606
NCBI-ProteinID:
XP_005424384
UniProt:
A0A6I9HLB8
LinkDB
All DBs
Position
Un
AA seq
750 aa
AA seq
DB search
MDNALVQEVAASLVREFLSRKGLKKTISTMDRELPRSALSINNRNELRNVLHLHSLYKQN
KAKENPLKTLLEIITSYFLEHRGTSRSSGSSSALAAPQSKSSASHPPDPLDEDHGNASAL
DDSKTQASRHDAENPLPRKHQPRSEKCHTGTTHSSNLPCAWDKKLKDSQEDLKAAVISEE
LKSTGKEKSRPRAGLVARGMMAGPVASPPEDPQKRRISKRSMSISSTAQPRGEEHEEHDL
SVPSPDVQESKASPTKSHLEFASRTVLSSHTSSASEKPRNSPKDPEDFLSKLLSERERAK
AEERKSLPSSGTDSSEKSLKVSVPHRHSVAGREKKERSLRKTESRLSGHRRSPTSIGCKE
DQMKEALELVDVEDEETAGEVNKTPDLSTLYMLQIVSKAIDISLAKELKNLLFGSSLCCF
SEEWKIQSFTFNNIPQLKYGIVQKKGGPCGVLAAVQACLLQQLIFADTNRNKDTRCLQPS
EAHRTKCLTLALADILWRAGGHEKALVALPSGRQQFTPTGKYKADGILETLILHSAMRYE
DLIVLLQQNIHQFEIGPYGCILLTVSVILSRSINLVRNDFDVLTNRLIGSHGYCTQELVN
LLLTGKAVSNVFNNVIELDSGNGNIIILKGITSRSDIGLLSLFEHYDVCQVGCYLKTPKF
PIWLVCSESHFSVLFCLEKDLLSDWKTGRRFDLYYYDGLANQDEEIRLTVDTTQVCPENK
ENYLTPPLEHCIRTKWQGAVIDWNGTEPIL
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgccttggtgcaagaagtggccgcatcactggtgagagagtttctcagtaga
aagggtttgaagaaaaccatcagcaccatggaccgggagcttccgcgctctgcgctcagc
atcaacaacaggaatgagctcaggaatgtcctgcacctgcactccctgtacaaacagaac
aaggcaaaggagaacccactgaagacactgctggaaattattaccagttatttcctggag
caccgtggcacttccaggagctctggttccagctctgctctggcagctcctcagagtaag
agctcagcatcccacccccctgaccccttggatgaggatcatggcaatgccagtgctctg
gatgacagcaaaactcaggcctctaggcatgatgctgagaatcccctccccagaaaacat
cagcccagaagtgaaaaatgccacacagggacaacccacagcagtaacttgccctgtgct
tgggacaagaagttaaaagacagtcaagaggatttaaaagcagctgtgatttctgaggag
ctgaaatccacagggaaggagaagtccaggcccagggctggtctcgttgccagaggaatg
atggctggaccagtggcaagtccaccagaggatccccaaaaaaggagaatttccaaaaga
tccatgagcatcagcagcacagcccagcccaggggtgaggagcatgaagagcacgacctg
agtgtcccaagccctgatgtgcaggaaagcaaagcatctccaacaaaatcccacctggaa
tttgcatcaaggactgtgctaagctcacacaccagctctgcctctgaaaaaccaaggaac
agccccaaagatccagaggactttttgtccaagctgctgtctgagagagagagggccaag
gcagaagaaaggaaatctctcccaagctctggtacagacagcagtgaaaaaagccttaaa
gtgagtgtccctcacagacattcagtggctgggagagaaaagaaggaaagatccctcagg
aaaacagagagtcggttgtcaggccacaggaggtctccaacatctattggctgtaaagaa
gaccagatgaaagaagccctagaattggttgatgttgaggatgaagagacagctggagaa
gtcaataagaccccagatctttcaacactctatatgcttcaaatagtatcaaaggcaatt
gatatttctcttgcaaaagaattaaaaaatcttctgtttggctccagtctttgttgcttc
agtgaagaatggaaaatccagagttttacatttaacaatatcccacagctaaaatatggc
attgtgcagaaaaagggtggcccatgtggggttctggctgctgtccaagcctgtctcctg
cagcagctcatctttgcagacaccaacaggaacaaagacacccgttgtctccagccctca
gaagctcacaggaccaagtgcctcaccctggctcttgctgacattctgtggcgtgcgggg
ggccacgagaaagccctggtggcactgccatcaggaagacagcaattcactcccacaggg
aaatacaaggctgatggaatcctggaaactctaatacttcacagtgccatgagatatgag
gacctgattgtacttctacagcagaatattcaccagtttgaaattggtccctatggctgc
atcctcctgactgtgtctgtcatcttatcaagatccatcaacctggtgcgcaatgacttc
gacgtgctcacaaaccgcctgattggcagccacggctactgcacccaggaattggtgaac
ttgcttttgactggtaaagctgtgtccaatgttttcaacaatgtgatcgagctggactct
gggaatggcaatatcatcattttgaaaggcatcacgagtcgcagcgatattggtttgctg
tccctatttgagcactatgatgtctgtcaggttggctgttacttgaagacccccaagttc
ccaatttggctggtctgcagtgaaagccacttcagtgtgcttttctgtttggagaaggat
ttgctcagcgactggaaaacgggacggaggtttgacctctattactacgatggcttggcc
aaccaggatgaagagattcgcttgacagtggatacaactcaggtgtgcccggaaaataaa
gaaaattatcttactcctccacttgagcactgtattaggacaaagtggcaaggagctgtc
atcgactggaacggcacggaacccatcttgtga
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