Geospiza fortis (medium ground-finch): 102039611
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Entry
102039611 CDS
T03755
Symbol
RABGEF1
Name
(RefSeq) RAB guanine nucleotide exchange factor 1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
102039611 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102039611 (RABGEF1)
Membrane trafficking [BR:
gfr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102039611 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
102039611 (RABGEF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
102039611
NCBI-ProteinID:
XP_005425472
UniProt:
A0A6I9HP92
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All DBs
Position
Un
AA seq
492 aa
AA seq
DB search
MNLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER
LQREEEEAYASSQSTQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFTASSRAGAKKAEIQE
AKAPSPSIHRQASIETDRVSKEFIEFIRTYQKPGQDIYKQCKLFLDTMSHKRELSIEEQS
ECAQDFYQNVADRLQTRWKVPPEKVEKAMDEVEKYIMTRQYKYVFCPETTDDEKKDLAVQ
KRIRALHWVTPQMLCVPVSEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF
NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL
CCAVAFIEKLDAQSLNLSQEDFDRFMTGQTSPKKQESDSFSPDVCLGVKQMCKSLDLLSQ
LNERQERIVSEAKKLEKDLIDWTDGITKEVEDIVEKYPLEIKAKSQALAAIDSENVENDK
LPPPLQPQVYAG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgaagtcggagcgcagagggatccacgtggatcagtcggagctgctgtgcaag
aagggctgtggttactatggcaaccctgcctggcagggcttctgctccaagtgctggagg
gaggaataccacaaggccaggcagaagcagatccaagaggattgggagctggcagagcgg
ctccagcgtgaggaggaggaagcctatgccagcagccagagcacccagggggcacagtcc
ctgaccttctccaagtttgaggagaagaaaaccaatgagaaaacaagaaaggtcactact
gtgaagaagttcttcactgcttcctccagagcaggagctaagaaggcagagatccaggag
gccaaagctcccagcccttccatccacaggcaggccagcatcgagacagacagagtgtcc
aaggagttcatagaattcatcaggacataccagaagcctggccaggatatctacaagcaa
tgcaaactctttttggacaccatgagtcataaaagggagttaagcattgaggaacaatct
gagtgtgcccaggatttctaccaaaatgtggcagacaggctgcagacacgttggaaagtg
ccccctgaaaaagtggagaaggcaatggatgaggttgagaaatacatcatgactcgccag
tataaatatgttttttgccctgagacaactgatgatgagaagaaagaccttgctgtccaa
aagaggatcagggctctgcactgggtgactccccagatgctctgtgttcctgtcagtgag
gaaatcccagaggtctctgacatggttgtaaaggcaattacagacatcatcgagatggac
tccaagcgtgtccctcgggacaaacttgcctgcatcaccaagtgcagcaagcacatcttc
aatgccatcaaaatcaccaaaaatgagccagcctctgctgatgatttcctgcccaccctg
atttacatcgtgctcaaggggaaccccccacgcctgcagtccaacatccagtacatcact
cgcttctgcaaccccagcaggctgatgactggggaggatggatattatttcaccaacctg
tgctgtgctgtggccttcattgaaaaactggatgctcagtccttaaacctgagccaggaa
gattttgatcgtttcatgacaggccagacctccccaaaaaagcaggagtctgacagtttc
tcccctgatgtgtgcctgggggtgaagcagatgtgcaaaagcttagacctcctctctcag
ttgaatgagagacaggaaagaattgtcagtgaagccaagaagttggagaaagacctcatt
gattggactgatggcatcaccaaggaggtggaggatattgtggagaaatatcctttagaa
atcaaagcaaaaagccaagccttagcagccattgactctgaaaatgtggagaatgacaag
ctgcccccaccactgcagcctcaggtttatgcaggataa
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