Geospiza fortis (medium ground-finch): 102039665
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Entry
102039665 CDS
T03755
Symbol
PCDH9
Name
(RefSeq) protocadherin 9
KO
K16498
protocadherin delta 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102039665 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gfr01009
]
102039665 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gfr04515
]
102039665 (PCDH9)
Protein phosphatases and associated proteins [BR:
gfr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102039665 (PCDH9)
Cell adhesion molecules [BR:
gfr04515
]
Cadherins
Protocadherins
102039665 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Big_9
MAP17
V_ATPase_I
EphA2_TM
RCR
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
102039665
NCBI-ProteinID:
XP_014164945
UniProt:
A0A6I9ZC84
LinkDB
All DBs
Position
Un
AA seq
1227 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSNTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPINTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAVDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPSTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSXXXXSSDHFSASECSSQGGFKTKGPLHTRQALNFGD
MPKYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGGGTLISHPLPLVQPQ
DEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGP
YQQPKSPLSTFAPQKEWVKKDKLVNGHTLTRTWKEDSNRNQFNDRKQYGSSEGHFNTGNH
MTDIPLANLKSYKQAPGSVESPKEHQL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggccgctttgattgcctgtttaagactggattct
gctatagctcaagaacttatttacactattagagaggagctgcctgaaaatgtgcccata
gggaacataccaaaggacctgaacatttctcatatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggacgcgcctctggtcaaagtgtccagt
aacacgggggaaatctttacaacatctaacagaatagacagagaaaaactatgtgctgga
gcttcctatgcagaagaaaacgagtgtttctttgaacttgaagtggtgattctccccaat
gacttttttaggctgatcaaaataaaaatcattgtaaaggatactaatgacaatgcacct
atgtttccatcccctgtcatcaatatctccatcccagaaaacactctgatcaacagtcgc
tttccaatcccatcagcaacagatcctgacacaggtttcaatggtgtgcagcactatgag
ttgttaaatgggcagagtgtctttggactggatattgtagaaactccagaaggggagaaa
tggcctcagctgattgtgcagcagaacttggacagagagcaaaaggacacctacgtgatg
aaaatcaaagtggaggatggaggtaccccccagaaatccagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtctttaaagagagtcaagtagaggtccat
ataccagagaatgcccctgtaggcacctctgtaattcagcttcatgctacagatgctgat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagtcgcccctgcaaccaaa
agattttttgctttaaacaacaccacagggctgattacagttcagaggtccttagatcga
gaagagactgctattcacaaagtgacagtgctggctagtgatggtagctctacaccagcc
cgggcaactgtgaccatcaatgtcactgatgtaaatgataaccctcctaacatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcccatcaat
acaaagattgccctaattacggtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtccccttccacttgaaagcagtttacgacaaccagtatttg
ttagagacctcttccttgttggactatgagggcaccaaagaattcagctttaaaattgtg
gcttctgattctggcaagccgagcttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccgattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccggcgtggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggtcctaatgcctcctttttcgatctggatcgaaag
acgggagttttgacagcctccagagtttttgacagagaagagcaggaacgtttcattttc
actgttacagcccgagataacggcacccctcctttgcagagtcaggcggctgtaattgtt
actgtgttggacgaaaatgacaacagtcccaaatttactcataatcatttccagtttttc
gtatcagagaacttaccaaagtatagcacggtgggggtgatcacagtgactgatgcagat
gctggggaaaataaagcagtgaccctttccatcctgaatgacaatgaaaactttgtgctg
gatccgtactctggagttataaagtccaacgtttcttttgatcgagaacagcagagctct
tacacctttgatgttaaggcagtggatggagggcaacctcctcgctcttctacagcaaaa
gtaacaataaacgtgatggatgttaatgataacagtcctgttgtcatctacccaccttct
aatacttcttttaagctcgtgccactctcagcaattccaggatcggtggtagccgaagtc
tttgctgtggatatagacactggcatgaacgctgagctgaagtacacaattgtaagcggc
aataacaagggtttgtttcggattgatccagtgacaggtaatatcactctggaagaaaaa
ccaactcctaatgacgtgggcctgcatcgcttagttgtcaacataagtgatttgggttat
cccaaatccctgcatactcttgtgcttgtgtttttatatgtaaatgatactgctggaaat
gcctcttacatttatgacttgatacgcaggactatggaaacacctttggatcggaacata
ggggacagtagccaaccctaccaaaatgaggactatctcacaatcatgatcgctatcgtg
gcgggtgccatggttgtcatagtggtgatatttgtcacggttcttgttcgctgtcgacat
gcatccagattcaaagctgcccagaggagcaagcaaggtgctgagtggatgtctcccaat
caggaaaacaagcaaaacaagaaaaagaaaaggaagaaaaggaaatctccaaagagctct
cttttgaactttgtgactattgaggagtccaaacctgatgatgcagttcatgaacctatc
aacgggacaataagccttccagcagagctggaggagcaaagtataggaagatttgattgg
ggcacagcaccaccatcaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctccgcagtctgcttttcatctcaaacctgacactccagtttcagtgaaaaag
caccatgtgattcaggaactcccgttggacaacacctttgttggtggttgtgacaccctt
tccaaacgctctnnnnnnnnnnctagttcagatcacttcagtgcctcagagtgcagttcc
caaggaggcttcaagacaaagggccccttacacaccagacaggcactgaattttggagat
atgccgaagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgt
gttacatttcacctccccgatggctcccaggaaagctgcagtgacagtggtctgggagac
cacgagccagtgggtggtggaaccctgatctcacaccctctccctctggttcagccgcag
gacgaattctacgaccaggcttcaccggacaagaggactgaagctgatggcaattctgac
cccaactcggatgggcctcttggtccacgaggattagcggaagctacagagatgtgtact
caagaatgcctggttttgggtcactcagacaactgttggatgcctcctagcttgggccca
taccaacagccaaagtctcctctctccacctttgcacctcagaaggaatgggttaagaag
gacaaactagttaatggacacacattgaccaggacctggaaagaggatagcaacagaaac
cagttcaatgatcgaaagcagtatggttccagtgagggccatttcaacactggcaaccac
atgactgacattcctctggccaacttgaagtcttataaacaggccccgggatctgtggag
agtccaaaggagcaccagctataa
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integrated database retrieval system
