Geospiza fortis (medium ground-finch): 102040004
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Entry
102040004 CDS
T03755
Symbol
BARD1
Name
(RefSeq) BRCA1 associated RING domain 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102040004 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102040004 (BARD1)
04121 Ubiquitin system [BR:
gfr04121
]
102040004 (BARD1)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102040004 (BARD1)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102040004 (BARD1)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102040004 (BARD1)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
102040004 (BARD1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102040004 (BARD1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102040004 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank_5
Ank
Ank_4
BRCT
Ank_2
Ank_3
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
NIBRIN_BRCT_II
zf-RING_UBOX
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
102040004
NCBI-ProteinID:
XP_014165756
UniProt:
A0A6I9ZD81
LinkDB
All DBs
Position
Un
AA seq
718 aa
AA seq
DB search
MAERGRKKFKALSCSRCAGVLREPVSLGQCEHVFCLSCVGDCVGTECPVCHMPAWVQDAQ
INRQLDNMIQLCSKLRQLLSTDTSDSAGDTSTPPESELEKKSKKEQIKMWFSPRSRKIRC
VVNRSQAGTKSTDLGQDTSSVYDFFPSPPHEKPSKPTKRPTQRQIKKMKKKHLADINKVW
SSEKPEQKKAEKAPKEKCVTICSQPVVLCTQEPESPEDRLRQESVKEADSSSNTEDMEVL
PQVESPEKKDNSEVVCSAPESKGKNGAAEALLSIANEVTPLKRGREQSTLQGTPHSKRAR
RSERGTPGKAGRQADGLEESLQSSPISPATEQTPVQISSSASKLTDTGMKTRSAALQAIN
SPSLSESPSTPSTSKSCSQGAIPLSPSVVKSPGVNTIARRNYKGETLLHVASIKGDLAAV
EELLKNGADPNVKDNAGWTPLAARNGHLAVVELLLLHGASRHAVNIFGLRPVDYAESKKM
KSLLMLPVENESFSLTQPSEVLSSSQPRNGPLGILGSNLSVEQQKLLNKLAAVLKAQRCT
EFNSRVTHLVIPDVPMPTTVKCMMAVLTGCWVLKFEWVQACLQSSAREQEEKYEVQGGPR
RARLNREQLLPKLFDGCYFYFLGPFKQHQKSDLLELVKAAGGQVLVRQPKPDSDVTQTIN
TVSYHAEPTSDQRLCTHYVIYDAASKFQPEKIRQGKVWMAPSSWLIDCVMSFQLLPVK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgaggcaggaagaagtttaaggcactgagctgctcccgctgcgccggtgtc
ctgcgggagcccgtgtccctggggcagtgcgagcacgtcttctgcctgtcctgtgtgggt
gactgtgttggcaccgagtgccccgtgtgccacatgccagcctgggtgcaggatgcacag
atcaaccggcagctggataacatgatccagctctgcagcaagctgcggcagctcctgagc
accgacacctcagattcagcaggggatacatccacaccacctgagtcagagttggaaaag
aagagcaagaaggagcagataaaaatgtggttcagcccgagaagcaggaagattcgatgt
gttgtgaacaggagtcaggctggcactaaaagcactgaccttggtcaagacacatcttca
gtttatgatttctttccttcccctcctcatgaaaagccctctaagccaacaaaaagacca
actcagagacagattaagaagatgaagaagaaacatctagcagacattaacaaagtgtgg
agctcagagaaacctgagcagaaaaaagctgagaaagctcccaaggaaaagtgtgtgacc
atctgcagtcagccagtagtgctgtgcactcaggaaccagagagtcctgaggacagactc
aggcaggagtctgtgaaggaagctgactccagcagtaatacagaggatatggaagttcta
ccacaggtggaatccccagagaagaaagataacagtgaggttgtgtgctctgcaccagag
agcaagggaaaaaatggtgctgcagaggcattgctgtcaatagcaaatgaagttacaccc
ttgaaacgtggaagggagcagtccacacttcagggtactcctcactctaagagagcaagg
agaagtgagaggggcactcctgggaaggcaggcaggcaggctgatggcttagaggagtca
ctgcagagctctcccatctccccagccactgaacagacaccagtccagatttcttcctct
gcatccaaactcactgacactggaatgaagacaagatctgcagcccttcaagccataaac
agcccttcactttcagaatctccctctaccccatccacttccaagagttgcagtcaagga
gcaataccactcagtccttctgtggtgaaatcccctggtgtcaacacaattgccagaaga
aattacaagggagagactttgctccatgttgcttccatcaagggtgacttagcagctgtg
gaggagctgctgaaaaatggagcagatcccaatgtcaaagataatgctggctggacgcca
ctggccgccaggaacggccacctggccgtggtggagctgctgctgctgcacggcgcctcc
cgccacgccgttaatatatttggtctgcggcctgtggactacgcagaaagcaaaaagatg
aaatctctgctaatgttaccagtggagaatgaatcattttcacttacccagccctctgag
gtgctgagctccagccagccaagaaatggaccccttggtatactgggaagcaatcttagt
gtggagcagcagaaattgctgaacaaattagcagcagtcctgaaggcccagaggtgcact
gaatttaacagcagagtaactcatcttgttatccctgatgttccaatgccaaccactgtc
aaatgcatgatggctgttctgactggatgttgggtcctcaagtttgaatgggtgcaagcc
tgtctgcagagctcagctcgagaacaagaagagaagtacgaggtccaaggtggcccccgg
cgcgcgcggctcaaccgggagcagctgctgcctaagttatttgatggatgctacttctat
tttttgggacctttcaaacagcaccagaagagtgacctgctggagctggtgaaagcagca
ggtggccaggtgctggttaggcagcccaaaccagacagtgacgtgacacagaccatcaac
acagtgtcctaccacgcagagcccacctctgaccagaggctctgcactcactatgtcatc
tatgatgcggcttccaagttccagccggagaaaatccggcagggcaaggtgtggatggcc
ccctccagctggctcatagactgtgtgatgtcatttcagctcctgcctgtgaagtga
DBGET
integrated database retrieval system
