Geospiza fortis (medium ground-finch): 102040034 Help Entry 102040034         CDS       T03755                                  Symbol THOC2 Name (RefSeq) THO complex 2   KO K12879   THO complex subunit 2 Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr03013   Nucleocytoplasmic transport gfr03040   Spliceosome Brite KEGG Orthology (KO) [BR:gfr00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     102040034 (THOC2)   09122 Translation    03013 Nucleocytoplasmic transport     102040034 (THOC2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:gfr03019]     102040034 (THOC2)    03041 Spliceosome [BR:gfr03041]     102040034 (THOC2) Messenger RNA biogenesis [BR:gfr03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      102040034 (THOC2) Spliceosome [BR:gfr03041]  Complex C   Other components    EJC/TREX     102040034 (THOC2)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     102040034 (THOC2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Motif Other DBs NCBI-GeneID:  102040034 NCBI-ProteinID:  XP_014162043 UniProt:  A0A6I9Z8V6 LinkDB All DBs Position Un AA seq 1518 aa AA seqDB search MPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLKERLDPETLESLGLIK QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSL IGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTLCHILGFKFKFYQDPS GETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIVEAKQIVRKLTMVILS SEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHAQSIMDQMPPFYSTSHKPI AVALCQLVHVTIEPLYRRVGVPKGAKGSPISALPNKRAPKQAESFEELRKEVFNMLCYLG PHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMETLFSCLLSITDQVLLPSLSLMD CNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKE NVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEA LANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVANQLKAGKSFDLLIL KEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLA LPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPS IDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQHKVHKYITSCELVMAP VHEAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVNKLKVQMKAIDDNQEM PPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQ LCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRY GRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHK WHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKR PDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVPATVQNGPGGAGMPTSLTINTV RLEEGTTEETDKLKEKSQGVVKVINKTVNATPKVTTSNGNSASNSKIIKEKDDKEKSGKE KDKEKKDKTPAATPEMKALGKDGKDKPKEERANKEEKAREIKEKTPKSDKEKEKVKKEEK ASKEEKSKTVVTIVESKSTAEKEREKEPSRERDLAKEMKSKENAKGGEKVPVAGSLKSPV PRSETSESEREQKRRKVDTHSSPSHSSTVKDNLNELKESSAKHYINHTTPTLSKSKEREV EKKDLDKSRERSREREKKDEKDRKDRKRDHSNSDREVPQDSTKRRKEENGTTGSSKHSKS ESPSDSPRLNEKEKEKNKSKSSGKEKGDSIKAEKMEKSSSGSKKESRHDKEKTEKKEKRD STGGKEEKKHHKSSDKHR NT seq 4557 nt NT seq  +upstreamnt  +downstreamnt atgccttctatcctagctgatgtattctgcatattagatattgaaacaagttgtttagaa gaaaaaaataagagggatcattttacacaactggtactagcctgtttgtatcttgtatct gacactgtcctaaaggagcgtttagatccagagacactggagtcattgggactcatcaag cagtctcaacagttcaatcaaaaatctgttaaaataaagacaaaactattttataagcaa cagaagtttaatttgctaagagaagagaatgaaggttatgcaaagcttattgcagaattg ggtcaagacttatctggaaatatcactagtgatttaatccttgaaaatatcaaatcttta ataggatgtttcaatcttgatcctaacagagttttggatatcatcctagaagtctatgag tgcaggcctgagtatgatgatttctttgtaccactgatagaatcttacatgtacatgtgt gaacctcaaactctatgccatatccttgggttcaaattcaaattttatcaggatccaagt ggtgagaccccttcctccttatacagagttgctgctgtccttttgcaacataatctcata gacttggaagatctttatgttcatcttctaccaggggataatgccatcattgaggaacac aagcgagagatagtggaagctaaacaaattgtcagaaaacttaccatggtcatcttatca tctgaaaagaccgaggaaaaggagaaagaaaaggaaaaagaggaggagaaaacggaaaag cctcctgataatcaaaaacttggcttattggaagccttattaaaaattggtgattggcac catgcacaaagcattatggatcagatgcctccgttttactctacttcgcacaagccgatc gccgtcgcgctttgccagctcgtccacgtgaccattgagcctctgtaccgcagagttggt gtacctaaaggagctaaagggtcaccaatttccgctttgccaaacaagagagcaccaaaa caagcagagagctttgaggaattgagaaaggaagtgttcaacatgctttgttacctcggt cctcatctgtcccacgatcccattttatttgcaaaagtggtgcgccttggaaaagcattt atgaaagagtttcagtctgatggaagcaagcaggaagataaagagaaaatggaaacactg ttcagctgtttgttgagtattactgatcaagtcttgcttccatctctttccttgatggac tgcaatgcatgcatgtctgaggaattatggggaatgttcaaaacctttccataccagtac cggtaccgcctctatgggcaatggaagaatgaaacatacaacagtcacccactgcttgtg aaagttaaagcccaaaccatagatcgagccaaatacatcatgaagcgtttaactaaggaa aatgtgaaaccctctggaagacaaattgggaagctcagccacagcaatcctacaatttta tttgattatattttatcacaaatacaaaaatatgataacttgataactccggttgttgat tcgctgaaatacctcacttccctgaactatgatgtcttggcatattgtatcattgaagca ttggcaaaccctgagaaggagagaatgaagcatgatgacactacaatctcaagctggctg cagagtctggcaagtttttgtggtgctgttttccgaaaatacccaattgaactcgcaggc ctcctgcagtatgtagccaaccagctgaaagctggcaaaagctttgatttgcttatttta aaagaggtggtgcagaaaatggcggggatagaaattactgaagaaatgaccatggagcag ttggaagccatgactggtggagaacagctgaaagctgagggtggatactttggccaaatc aggaatacaaagaaatcatctcagagattaaaagatgcattattggaccatgatcttgcc ctcccactgtgcctgcttatggctcaacagagaaatggtgttgtgtttcaagaaggaggg gaaaaacatctgaagctggtgggaaaactttatgatcagtgccatgataccctggtacaa tttggtgggtttttagcatccaatctaagcacagaggattatattaagcgagtgccttct attgatgttctctgtaatgagtttcacacacctcatgatgctgcatttttcctctcaaga cccatgtatgcacaccacatttcatcaaagtatgatgaactaaaaaaagctgagaaggga aataaacagcaacacaaagttcacaaatacattacatcatgtgagttggtgatggctcct gttcatgaagctgtgatttctctgcacctccctaaagtctgggatgacatcagccctcag ttttatgctacattctggtctttaacaatgtatgaccttgctgtgccacacagcagctat gacagagaagtcaataaacttaaagtccagatgaaagccatagatgacaatcaggaaatg cctccaaataagaagaaaaaagaaaaagaacgttgcacagctctgcaggataagctcctt gaagaggagaagaagcagttggagcatgtgcagagggttctacagagattgaaactagag aaagataactggcttctggcaaaatctaccaaaaatgagactatcaccaaatttttacag ttgtgtatatttcctcgctgcattttttcggcaattgatgcagtttactgtgctcacttt gttgaactggtgcatcagcagaaaacacccaatttctcaacacttctctgctatgaccga gttttctctgatattatatatacagttgcaagttgcacagaaaatgaagccagtagatat ggcaggtttttatgctgtatgctggagactgtgaccagatggcacagtgacagagtcata tatgaaaaggaatgtggcaactatccaggtttcctgactatattacgagcaactggattt gatggtggaaataaggctgatcagttggattatgagaattttagacatgtggtacacaaa tggcactataaattaactaaggcttctgtgcactgtctggaaacaggtgaatatacacat atcagaaacatcctgattgtgctgaccaaaatccttccatggtatccaaaagtgctgaac ctgggtcaagccttggaaagaagagtacataagatatgtcaggaagagaaagagaagaga cctgatctatatgcattggctatgggctattctggacagttgaaaagtaggaagcctttc atgatacctgaaaatgaatttcaccacaaagacccacctgccaggaatgctgtacctgca acagtacaaaatgggccaggtggtgctgggatgcctacgtctctcacaataaatacagtt agactggaagagggcactactgaggagactgataaactaaaggagaagtctcagggtgtg gtgaaagttattaataaaactgtcaacgctacaccgaaggtgacaacaagcaatggaaac agtgcatctaatagcaaaattattaaagagaaagatgataaagaaaaaagcgggaaggaa aaagataaagaaaagaaagacaagactccagctgccactccggagatgaaggcacttggg aaagatgggaaagataaaccgaaggaagaacgggcaaacaaagaggagaaagcaagagag atcaaggagaaaacgccaaaatctgacaaggagaaggaaaaggtgaagaaagaagaaaaa gcgtcaaaagaagaaaagtccaagacggttgttaccatcgttgagtcaaagtcaactgca gaaaaggagagagaaaaggaaccatccagagaaagagatctagcaaaggaaatgaaatcc aaggaaaatgctaaaggaggagaaaaggtgccagtagctgggtccttgaagtcacctgtt ccccgatcagaaacatcagaatctgaaagggaacaaaaacgccgcaaagttgatacacat tcttctccgtcacattcctcaacagtaaaggacaacctcaacgaactcaaggaatcttca gcaaagcactacataaaccacactactccaacactgtccaagagtaaggagagagaagtg gagaagaaagatttggacaagtcaagggagagatccagagagagagagaagaaagatgaa aaggacaggaaagatcgaaaaagggatcattcaaacagtgaccgagaggtaccccaggat tcaactaaacgacgcaaagaggaaaatggcacaactggttcttcaaaacatagcaaaagt gaaagtccttctgattcccctcgcttaaatgaaaaagagaaagagaaaaacaaatcaaag tcttcaggaaaagagaaaggtgattcaatcaaggcagaaaagatggagaagagctcctct ggtagcaaaaaggaatcaagacatgataaagaaaaaacagagaagaaagaaaagcgggac agtactggggggaaagaagaaaagaaacatcataaatcttcagacaagcatagataa

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