Geospiza fortis (medium ground-finch): 102040212
Help
Entry
102040212 CDS
T03755
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102040212 (TRPA1)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
102040212 (TRPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102040212
NCBI-ProteinID:
XP_014163320
UniProt:
A0A6I9Z7M8
LinkDB
All DBs
Position
Un
AA seq
1117 aa
AA seq
DB search
RSREKAANSSAYQGVVCEADAASVASQDVFKVISDGSACRLRSFIKKNRSGLTKVDELNA
TPLHHAAEGGQIELMQLIIDDSSYEVLNVMDSSGNTPLHWATKKNQVESVRLLLSRGANP
NILNSNMMAPLHMAVQSLHNEIVKVLVQHSSTDINLEGEAGNTPIIVACYKDNPEALTLL
IENGGKICKPNKTGCMPIHAAAFSGAKTCLEILLKKGEELGHSAKTHINFTNNGKCSPLH
LAVQSGDLEMIKMCIEFGAQIDLKQNEKCTALHFAATQGATEIVKLMMSSYAGEESIIDA
VDGNKETLLHRTALFDHYELAEYLISMGANIDSVDIEGRSPLLLATSCASWKIVNLLLSK
GANVSLKDHLGRNFLHLTVLQPGGLQHLNEKYLQMEHIKNLVVDEDNEGCTPLHYACRQG
VALSVNNLLSLNVSIYSKSRDKKSPLHFAASYGRINTCQRLIRDMKDTRLLNEGDKKGMT
PLHLAAQNGHEKVVQFLLKRGALFLCDYKGWTALHHAAFGGYTRTMQIILDTNVKCTDRV
DEEGNTALHLAAREGHAKAVRLLLDYGAKILFNKAVASFFHEAIHNRRKDVVSAVILHKR
WEEAVVTFSHSSSANKCPLLEMVEYLPDSFKLVLDNCIIESSEEKTSRDFYIEYNFRYLQ
CPLTLNKKVKDGEDIFYEPLTTLNAMVRHNRMELLSHPVCKEYLLMKWMAYGFRAHLMNL
GIYSLGLIPLTLLVTHIQPGRPLNGTELYEARPLEYEDSYFTRVCMCLVLIMSLLGICKE
IFQLIQQKLKYLLDYSNLLDWTIYTTSIIFVSSLFINTPAHLQWECGAIAVYLSWMNFLL
YLQRFENYGIYVVMFWEILRTLIRIAVVFFFLILAFGLSFFVLLGSQQTYSTPLLSVMKT
FAMMLGDINYHDAFLDPLLSSELPYPFLSYTVLIIFTLLIPILLMNLLIGLAVGDIAEVQ
KYAALKRIAMQVNLHTNLEKKLPFWFLSRVDQESITVYPNRPRYCGFMSVFQYCFGCEDS
TTYAQSPDTTLELEVLKQKYRLKDISTLLEKQHDLIKLIIQKMEIVSEAEDEDSNDLFQH
KFRKRQLEHKNSKWDTVLKAVKTNIPNPSTEKNNSFF
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
cgctcccgggagaaggcggccaactccagcgcctaccagggcgtcgtgtgcgaggccgat
gccgcctccgtcgcctcgcaggatgtcttcaaggttatttcagatggaagtgcctgtagg
ctccggagcttcattaagaagaatcgttctgggctcacaaaagtggatgaattaaatgcc
accccactgcatcacgctgctgaaggaggacaaatagaactcatgcaattgatcatagat
gattcgtcctatgaagtattaaatgtgatggattcttctggaaataccccactgcactgg
gccacaaagaaaaaccaggtcgaaagcgttcgcttgcttctcagcagaggagccaatcca
aacattctcaactccaatatgatggcacctttgcatatggctgttcagtccctgcacaat
gaaattgtgaaggttttagtccaacatagcagtacagatattaacttggaaggtgaagca
gggaacacacctataattgtagcgtgttacaaggacaatcctgaagcactgacactcctg
attgaaaatggaggaaaaatatgtaaaccaaacaaaacgggatgtatgcccatccatgca
gcagcattttcaggtgcaaaaacatgtctggaaattcttttgaaaaaaggtgaagaattg
ggtcactctgctaaaacccacatcaattttaccaataatggaaagtgcagtccacttcat
ttggcagttcagagtggtgacctcgaaatgattaaaatgtgcattgaatttggagctcaa
attgatctaaaacagaatgaaaaatgcacagcacttcattttgctgccactcaaggagcg
acagagattgtaaagctaatgatgtcatcctatgctggggaggaatccattattgatgct
gtagatgggaataaggaaacattgcttcacagaacagcactgtttgatcattatgaactg
gcggagtatttgatttcaatgggggctaatattgatagtgttgacatagaaggtcgatcc
ccgcttctgctggccacttcctgtgcatcatggaaaattgtgaacttactgctttcaaaa
ggagcaaatgtgtcattaaaagatcaccttggtcggaatttcttgcatttgaccgtgttg
cagcctggaggattacagcatctgaatgagaaatatctgcagatggaacatattaaaaat
cttgtcgtggatgaagataatgaaggatgcactccgttgcattatgcatgcagacaaggt
gtggccctctctgtaaataatttactcagcctcaacgtttccatctactccaagagcagg
gacaagaagtcgcccttacactttgctgccagctatgggcgcatcaatacttgtcaacga
cttatcagagacatgaaagacacaagacttttgaatgaaggtgataagaagggaatgact
ccccttcacttggcagcccagaatggtcatgagaaggtagttcagtttcttctgaagaga
ggggctctcttcctctgtgattataaaggctggacagccctgcaccatgctgccttcgga
ggatacactcgcacaatgcagataattttggatactaatgtgaagtgtactgacagagtg
gatgaagaagggaacacagctttgcacttggctgcacgagaaggacatgcaaaagcagtg
aggttacttcttgactatggtgcaaaaattctgttcaacaaagcagtagcttcttttttc
catgaagcaatacacaataggagaaaagatgtggtgtctgctgtcattttgcacaaaaga
tgggaagaagctgttgtgactttctctcactcttccagtgccaataagtgtcctttgctg
gaaatggttgagtatcttcctgattcatttaaactggtgttggacaactgcataattgag
tcttcagaagaaaagacaagtcgagacttctatattgaatacaacttcagatatcttcag
tgtcccttgacacttaacaagaaagtgaaggatggtgaagacattttctatgaaccactt
accactttaaatgccatggtgcgccacaatcgcatggagctactcagtcatcctgtgtgt
aaagaatatttgcttatgaaatggatggcctatgggtttcgagcacatttaatgaattta
ggcatatattctcttggtctcatcccactgactcttctggtcactcacatacaaccagga
agacctttgaatggaacagagctctatgaagcaagaccattagaatatgaggactcatac
ttcacaagggtgtgtatgtgtttagttttaattatgagtttactgggcatctgcaaagaa
atatttcagctgattcagcagaaattgaaatatttgttggattactccaatctactggac
tggaccatttatactacaagcataatttttgtgtcttctttatttattaatacaccagct
catttgcagtgggaatgtggagcaattgctgtgtacttgtcttggatgaacttcttgctt
tatcttcaacgatttgagaactatggcatctacgttgtgatgttctgggaaattttgagg
actttgattcggattgctgtggttttctttttcctgatactggcctttgggctgagtttc
tttgtccttttgggttcacagcaaacatacagcacacctctgctttctgtaatgaagaca
tttgcaatgatgctgggagacattaattaccatgatgcattcctggaccctttactaagc
agtgaattgccatatccattcctgagttacacagttctcattatatttaccttgcttatt
ccaatccttcttatgaacttactaattggtttggctgttggtgatattgctgaagtacaa
aaatatgctgcgctcaaaaggattgcaatgcaggttaatcttcataccaacttagagaag
aagctgccattttggttcttaagtcgggtggaccaggaatcaatcactgtatatcccaac
aggccgagatactgtggatttatgagcgtgttccagtattgctttgggtgtgaggactct
accacatatgcacagagccctgatactacactagaattggaagttctgaagcagaaatac
aggctcaaagatatatcaacattgttggaaaagcaacatgacctcattaaactgattatc
caaaaaatggagatagtgtcagaggctgaggatgaagacagcaatgatttatttcagcac
aagtttaggaaaaggcagttagagcacaagaatagtaaatgggatacagtgttaaaagct
gttaaaacaaatatacctaacccaagcacagaaaagaacaatagcttcttctag
DBGET
integrated database retrieval system
