Geospiza fortis (medium ground-finch): 102040570
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Entry
102040570 CDS
T03755
Symbol
PRDM1
Name
(RefSeq) PR/SET domain 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gfr03000
]
102040570 (PRDM1)
Transcription factors [BR:
gfr03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
102040570 (PRDM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
zf-C2H2_6
C2CH-3rd_BIRD-IDD
B129_C2H2-zf
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
102040570
NCBI-ProteinID:
XP_005426655
UniProt:
A0A6I9HPL6
LinkDB
All DBs
Position
Un
AA seq
789 aa
AA seq
DB search
MKMDMEDADMTLWTEADFEEKCTYIVNDHPLDPSADGGTLTQAEASLPRNLTFKYASNCK
EVTGVISKEYIPKGTRFGPLVGEIYTSDTVPKNANRKYFWRIYSSGELHHFIDGFNEDKS
NWMRYVNPGYSVQEQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPPSREL
TMMNLTQTHINPKQHSTDKDELYQKSVPKKEHSVKEILKMESNPPKGKDFFQTNISPVNP
EKDLDDLCKNYSPERCFFPRVVYPIRPHIPEDYLKASLAYGMDRPSYITHSPIQASTTPS
PSGRSSPDQSLKSSSPHSSPGVTVSPLAPTSQEHREPYSYLNGSYGSEGLGSYPGYAPPG
HLSPAFLPSYNPHYPKFLLPPFNMSCNNLSALNNINGINNFNLFPRMYPLYGNLLSGGSL
SHHMLNPTTLPSSLPSEGGRRLLQPDHPRDFLIPAPNSAFSITGAAASMKDKPCSPTSGS
PTAGTAASSEHIMQPKPTSVVLAATGGEEAMNLIKSKRNVTGYKTLPYPLKKQNGKIKYE
CNVCSKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVC
HKRFSSTSNLKTLLQLHSGEKPYQCKLCPAKFTQFVHLKLHKRLHTRERPHKCIHCHKSY
IHFCSLQVHLKGNCPVAPASGRSMEDLNRINEEIEKFDISDNADKLEEVEDNIDLTSIVE
KDILTMLRREMEGANLKVSLQRNLGNGLISSGCNLYESSDMSVMKLPHGHPLPLLPVKVK
QETIEPMDP
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggacatggaggatgctgacatgactctgtggacagaggctgattttgaagag
aagtgcacatatattgtaaatgatcatccgctggatcccagtgccgatggaggcacccta
actcaggcagaggcttccttgccaaggaacttgactttcaaatatgcatctaactgcaaa
gaggtcactggagtgataagcaaagagtacatcccaaaaggaacacgctttggacccctg
gtgggagagatctataccagtgatacggttcccaagaatgcaaacagaaaatacttttgg
cggatctattcaagtggtgaacttcaccacttcattgatggatttaacgaggacaagagc
aactggatgcgttatgtaaaccctggctactctgttcaggagcagaacttggctgcttgt
cagaatggaatgaacatctacttctataccatcaagcccatccctgccaaccaagagctc
cttgtgtggtattgccgagactttgcagagaggctgcactatcccccctccagagagctg
acaatgatgaacctcacacaaacccacattaatccaaagcagcacagcactgataaagat
gagctttatcagaaaagcgtcccaaagaaggagcacagtgtgaaagaaattctgaaaatg
gaatccaatcctcctaaaggaaaagacttctttcagaccaacatttcaccagttaatcca
gaaaaagacttggatgatttatgtaagaactatagcccagagaggtgtttcttccctcga
gttgtctacccgatccgacctcacattcctgaagactatctgaaagcttccttagcatat
ggcatggacagacccagctacattactcactcacccatccaggcatctactacaccaagt
ccttccgggaggagcagcccagaccaaagtttaaaaagttcaagccctcacagtagtccg
ggtgtcacagtttcacctctggcacctacttcgcaagagcacagagagccatactcttac
ttgaatggatcatatggctcagaaggattggggtcttatcctggatatgcacctcctggc
cacctctcacctgcctttctaccgtcctataacccccattaccccaaattcctgttacct
ccattcaatatgagctgtaataacctgagcgctttgaacaatatcaatggcatcaacaat
ttcaatctcttcccaaggatgtaccctctttatggcaacctgctcagtggaggtagcctt
tcccaccacatgctcaaccccaccacactccccagctcattgcccagtgaaggaggccgt
cgactgctgcagcctgatcatccaagagacttcctcataccagcacccaacagtgccttc
tctatcacgggcgctgctgccagcatgaaggacaagccatgcagccctaccagtgggtcc
cccaccgctggtacagcagccagttcggaacacataatgcaacctaaacctacctcagtg
gtgttggctgccaccggcggtgaagaagccatgaatctcattaaaagtaagaggaatgtg
accggttacaaaaccctcccatacccactgaaaaagcagaatgggaagatcaagtacgaa
tgcaatgtttgctccaagacctttggccagctctccaatctaaaggtgcacctccgagta
cacagtggagagagaccatttaaatgccagacttgcaataagggcttcacacagctggct
cacctccagaagcactatctggtacatacgggagaaaaaccccacgagtgtcaggtttgt
cacaagcggttcagcagcaccagcaatctcaaaaccctcctgcagctccactctggagaa
aagccttaccagtgcaagctctgcccagccaaattcacccagtttgtgcacctgaagctg
cacaagcgtctccacacccgggaacgcccccataaatgcatccactgccacaagagctac
attcacttctgcagcctccaggtccacctgaagggcaactgccctgtcgccccggcctcc
ggccgctccatggaggacctgaaccgaatcaatgaggagatcgagaagttcgacatcagt
gacaatgctgacaagctggaagaagtggaggataatatcgacttaacatcgatcgtggag
aaggatatactgaccatgctcaggagggaaatggaaggagctaacctgaaagtctctctg
cagaggaacctgggaaatgggcttatctcctcaggatgcaacctttacgagtcgtcagat
atgtcagttatgaagttgcctcacggtcacccactacctctgttacctgtaaaggtcaag
caagaaacaattgaaccaatggacccttaa
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