Geospiza fortis (medium ground-finch): 102040649
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Entry
102040649 CDS
T03755
Symbol
HIF1A
Name
(RefSeq) hypoxia inducible factor 1 alpha subunit
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04137
Mitophagy - animal
gfr04140
Autophagy - animal
gfr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102040649 (HIF1A)
04137 Mitophagy - animal
102040649 (HIF1A)
04148 Efferocytosis
102040649 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gfr03000
]
102040649 (HIF1A)
Transcription factors [BR:
gfr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
102040649 (HIF1A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
102040649
NCBI-ProteinID:
XP_005418082
LinkDB
All DBs
Position
Un
AA seq
828 aa
AA seq
DB search
MGFACPCIRGSSERVKRCKCYSVISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHT
VSAHLDKASIMRLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDM
IYMSENVNKCMGLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFL
RMKCTLTSRGRTVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPH
PSNIEVPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTK
THHDMFTKGQVTTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKD
LIFSLGQTECMLKPVESPDMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTII
SLDFSSNESDEQQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALN
REVVSKLEPNTEPLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMASEF
KLELVEKLFAMDTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSSSS
QSAGSIPLFQQQQQQGQAAAGSPEEVKLKPQERGDEVKPIVVPSSPPRGGPEPSSAPASP
YGGNRSRTASPIRAGKGTVEQVEKPSPGAPGLLTVTLNERSTALDEELNPKMLALHNAQR
KRKMEHDGSLFQAVGIGSLFQQTGDRGGNASLAWKRVKGCKTNGHSGVEQKTIILLSTDI
ASKLLGQSMDESGLPQLTSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgcctgcccttgtatccgagggtcatctgagcgggttaagcgctgtaagtgt
tacagcgtgattagctcagaacggaggaaagagaagtcgcgggatgcagcgcggtgcagg
aggagcaaggagtcggaggtgttctatgagctggcccaccagctgcccctgccccacact
gtcagtgcacacctggacaaggcctccatcatgaggctcaccatcagctacctgcgcatg
aggaagctgctggatgctggtgagctggagacagaagccaaaatggagaaggaactgaac
tgtttctacttgaaagctctcgatggctttgtcatggttctgtctgaagatggggacatg
atttacatgtctgaaaacgtgaacaagtgtatgggactcactcagtttgagttgacgggg
cacagtgtatttgatttcactcatccatgtgaccacgaggagctgagagaaatgcttaca
cacagaaatggtcctgtgaaaaagggcaaagagcagaacacggagcgcagcttttttctc
agaatgaagtgtacactgactagcaggggaagaacagtgaatataaagtctgctacatgg
aaggtgctgcactgcactggccacatccgtgtgtacgacacgtgtgggaaccagactcac
tgtggctacaaaaagcctcccatgacctgcctggtgttgatctgtgaacctattcctcac
ccctcaaacattgaggtccccctggacagtaaaactttcctcagtcgccacagtcttgat
atgaaattttcctattgtgatgaaagaattacggagttgatggggtatgagccagaggag
ctcctgggtcgctcaatctatgagtactatcacgcactggattctgatcatctgaccaaa
acacaccacgacatgttcacaaaagggcaggtgacaacaggacagtacagaatgctggcc
aaacaaggtggctatgtctgggttgaaactcaagcaactgttatatacaacactaagaat
tctcagccacagtgcatagtgtgtgtgaactatgtgttgagtggaattgttcagaaggac
ttaattttttcccttggacaaactgagtgtatgctgaaaccagtggagtctcctgacatg
aaaatgaccaaaatattcagtaaagatgacctggatgataccaacagcctatttgaaaaa
cttaaacaagaaccagatgctttaactgtgctagccccagctgctggagacacaattatc
tctctagatttcagcagtaatgagtctgatgaacaacaatgtgatgaagttcctttgtat
aacgatgtaatgctcccctcatccagtgagaaattgcagaatataaatatggcaatgtcc
ccactacctgcctctgaaactacaaagccacttcgtagcaatgctgatcctgcactcaat
agagaagttgtatcaaagctggagccaaacacagagccactcgaactttcttttaccatg
cctcaggtgcaagaacaaccaaccagcccttctgatgcaagtactagccaaagttcacct
gagcccagtagtcccaacgactactgctttgatgtggataatgatatggccagtgaattc
aaactggaattagtggagaaactctttgccatggatacagaagcaaaaaatccattctct
actcaggaaaccgatttagatttagagatgttggctccttacatcccgatggacgatgac
ttccagctgcgctccttcgatcagctgtccccgctggagagcagcagctcctccagctca
cagagtgcaggcagcatccccctgttccagcagcagcagcagcagggccaggcggccgcg
ggcagccccgaggaggtgaagctgaagccacaggagcgcggggacgaggtgaagccgatc
gtggtcccttcctcgcccccgcgcgggggccccgagccgagcagcgcccccgcctcgccc
tacggggggaacaggagtcgaactgcctctcccatcagggcagggaaaggaacggtggag
caggtggaaaagccttctccaggagcacccggcttgctaacagtcactctcaatgaaaga
tctactgcactggatgaagaactaaatccaaagatgctagctttgcataatgctcagaga
aaacgaaaaatggaacatgatggttcactttttcaggcagttggaattgggtctttattc
cagcagacaggtgaccgtggaggaaatgcatcacttgcttggaaacgtgtaaagggatgc
aaaacaaatggtcacagtggagtggagcaaaagacaatcattctactatcaactgacata
gcaagtaaacttctagggcagtcgatggatgagagtggactcccccaactcacgagttac
gactgcgaagtaaatgctcccatacagggcaacagaaacctgctacagggggaagaactg
ctcagagctctggatcaagttaactga
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integrated database retrieval system
