KEGG   Geospiza fortis (medium ground-finch): 102040686
Entry
102040686         CDS       T03755                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03030  DNA replication
gfr03410  Base excision repair
gfr03420  Nucleotide excision repair
gfr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102040686 (RFC2)
   03410 Base excision repair
    102040686 (RFC2)
   03420 Nucleotide excision repair
    102040686 (RFC2)
   03430 Mismatch repair
    102040686 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gfr03032]
    102040686 (RFC2)
   03036 Chromosome and associated proteins [BR:gfr03036]
    102040686 (RFC2)
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102040686 (RFC2)
DNA replication proteins [BR:gfr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102040686 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    102040686 (RFC2)
Chromosome and associated proteins [BR:gfr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102040686 (RFC2)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102040686 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    102040686 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 RCF1-5-like_lid Viral_helicase1 Mg_chelatase AAA_24 AAA_11 AAA_assoc_2 nSTAND3 DNAX_ATPase_lid AAA_19 MipZ AAA_18 AAA_5 AAA_28 ABC_tran AAA_30 AAA_25 AAA_23 RuvB_N NTPase_1 MeaB RNA_helicase SLFN-g3_helicase Rad17 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 102040686
NCBI-ProteinID: XP_005429245
UniProt: A0A6I9HSY7
LinkDB
Position
Un
AA seq 310 aa
MKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLE
LNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKT
TRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFT
AQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAH
LWRLGYSPEDVIGNIFRVCKTYQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARL
CQKTAAPAAS
NT seq 933 nt   +upstreamnt  +downstreamnt
atgaaactgtccgaaatagttggaaatgaagatactgtgagcaggttggaggtctttgca
aaagaggggaatgtaccaaacattataattgctggccctccaggaacaggtaaaaccacc
agtatcctgtgtttggctcgtgctctgcttggtcctgcattaaaggatgctgttctggag
ctgaatgcctcaaatgacagaggtattgatgttgtaagaaacaaaatcaaaatgtttgcc
cagcagaaggtcacacttccaaaaggtcggcataagataatcatccttgatgaagcagac
agcatgacagatggagcacagcaagcattgagaagaacaatggagatttattccaaaaca
acacgttttgcactggcatgcaatgcctctgacaaaatcatagaacccattcagtctcgg
tgtgcagtgctgcgctacaccaagctgacagatgcacaaatacttgccaggctgctgaaa
attgttgagaaagaggatgtagcatatacagatgatggactagaagccattatcttcaca
gcccaaggtgatatgagacaggcattaaacaacttacagtccacatactctggatttggc
tttataaacagtgaaaatgtctttaaggtatgtgatgagcctcatcctctgctggtgaag
gaaatgatacaacactgcataaatgcaaatattgatgaagcatacaagattcttgcccac
ctgtggcgccttggatactctccagaagatgtcattggcaatatcttccgtgtgtgtaag
acctatcaaatgccagaatatctgaaactggaatttatcaaggaaattgggtacacccac
atgaagatagcagaaggtgtgaactccctgttacaaatggctgggctgctggcccggctg
tgccagaagactgcagcccctgcagccagctag

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