Geospiza fortis (medium ground-finch): 102040711
Help
Entry
102040711 CDS
T03755
Symbol
CIITA
Name
(RefSeq) class II major histocompatibility complex transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102040711 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gfr01001
]
102040711 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gfr04054
]
102040711 (CIITA)
Enzymes [BR:
gfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102040711 (CIITA)
Protein kinases [BR:
gfr01001
]
Serine/threonine kinases: Other
TAF1 family
102040711 (CIITA)
Pattern recognition receptors [BR:
gfr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102040711 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
Silic_transp
Motif
Other DBs
NCBI-GeneID:
102040711
NCBI-ProteinID:
XP_005420564
LinkDB
All DBs
Position
Un
AA seq
1054 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPVHLCTFFDPKSSGDEEGDFSTDLEVDASNYEQLNNMDFP
YENGDGFYPCCNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQSCLKRTFLGSAAESYCDASEPKYKKIVEVPAASAGSGSFFAMPLNSHPVSCTSLTNQ
HMSCSVPAAHGLERSLIIPGLSEPLTSEYLPVNVKGYQENPGLAGAPQQIFNFVLENGTS
DVVVYPDLEKFQEVQDSIIPSEEPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHL
FIDGTLVQSQTETKTGKTSAKAMEKELVTCSLQEKEKTAIDRSQIFQDWCNGEFSQFEFV
FWFDCKQISLPEKQYSLKELLLEFFLKPQEGSKEIFEYMLQNPDKVLLIFDGFKGLHDHE
NFPRCSGSQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKLYQFVSKVDKTIEIVG
FSPQQRELYITKYFEESLYCDCALKLIKGCEYLFSHCYSPLMCRFVCFLCETVLEMGEKN
LPSTLTELFLKFFQQKIMFMETDVTTTENQENLATLARVAWCFGEKHQSAMKSDLIPSKE
VKEFALKYGFFLPFAFPRHSDSEEEEFGCTFSDFVIQNFLCALHLLLAEELKDKNLTKYL
SFLSKKKKPYNWLDLMPRFLAGLMFLQDDPSFCFLSNEDEKQSTKKQKTLLKYIRRLQIN
TLCPERLLELLCCVYETQNNYLLQHVALRLEPRLSFLGIALTPPDVHVLHSILKRSRKEF
SLDLQNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLKASTEKFVLDP
FKAKTMKDISDLSDLVEMQEKMVNCVQEASGCTSYEIPAIRNLRKLEFALGPACGLQGLL
KLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPILTSLETLNLSQNKITDLGAES
LAAALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITGVGAQQLTDS
LRQCPHMKNLVMWNPTIPYGVLEHLHQLDPRISV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgac
ccagtgcatctgtgtactttctttgatcctaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgatgccagcaactatgaacagttaaataatatggatttccca
tatgaaaatggagatgggttctacccctgttgcaacaccacggatgcttatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaagagaagcaggttgaagacattttt
gcagggaaccttattttggatgacatagctgctgaaaacactgagaaatttcctgacata
aagatgcagtcatgtcttaaacgaactttcttaggctctgcagcagagagttactgtgat
gcttcagaacccaaatataagaaaattgtggaagtccctgcagcttctgcggggagtggc
agtttctttgctatgcctctcaacagccatccagtgagctgcacctccctaactaaccag
cacatgtcctgttctgttcctgctgcccatgggctggaaagaagcctcatcattcctgga
ttgtcggaacctttgacctcagagtacctaccagtcaatgtgaaagggtaccaagagaat
ccaggcttggcaggtgctcctcagcagatatttaactttgttcttgaaaatggcacatct
gatgttgtagtatatccagatttagagaaatttcaagaagttcaagattccataattcct
tctgaagaacctttcaaaagaccagagcaagtggaaactttctgttcatcccttaaggat
tatttccgagacacgtgcaaatctgtgaccatggagcgggaagtaaatctggatcacctg
ttcattgatgggacacttgttcaaagtcaaactgaaaccaagactggaaagaccagtgca
aaagcaatggaaaaggagctggtaacctgcagcctgcaagagaaggaaaagacagccatt
gatagaagccaaatatttcaagactggtgcaatggagagttttctcagtttgaatttgta
ttttggtttgactgcaaacaaataagcttgcctgagaagcaatacagcctgaaggaactg
ctgcttgaattttttttaaaacctcaagagggaagcaaagagatctttgagtatatgttg
caaaatcctgataaagtccttctgatttttgatggttttaaagggttgcatgatcatgag
aattttcctcgttgctcaggcagccagcctgaaaaggatttgtgcagcataaaggagctg
ctttcaggactcatccaaaaaaagatactcaatggctgtactttgttatttacagcaaga
ccaaaagacaaactgtaccagttcgtgtccaaagtggataagactattgaaattgtagga
ttttcccctcagcagagagaattgtacataaccaaatactttgaagaatcactctactgt
gattgtgcactgaaattaatcaaagggtgtgagtacttgttcagtcattgttacagtcct
cttatgtgtagatttgtttgttttctctgtgagacagtgcttgaaatgggagagaaaaat
cttccttcaactcttacagagctcttcctgaaattttttcagcaaaagataatgtttatg
gaaacagatgttaccaccacagaaaatcaagagaatcttgctaccctagctcgtgtagcc
tggtgttttggagaaaagcaccaaagtgccatgaaaagtgatcttattccttctaaggaa
gttaaagagtttgctctgaagtatgggtttttcctgccctttgcattccccagacattca
gatagtgaagaagaggaatttgggtgcacattctctgattttgtcattcagaatttcttg
tgtgcgcttcaccttttgttagcagaagagctcaaggataaaaatctaacaaagtacctg
tcttttctatccaagaagaaaaaaccttataactggttagatttaatgcctcgatttttg
gctggtttgatgtttctccaggatgacccctccttctgctttctttcaaatgaggatgaa
aaacaatcaaccaagaagcagaagacactcttgaaatacattagaaggctgcagattaat
actctctgtccagagaggttgctggagcttttatgttgtgtttatgaaacacagaacaat
tatctcctgcagcatgtggccttaagactcgagccaaggttgtcttttctgggcatagct
cttacaccacctgatgtccatgtactgcactctattttgaaaaggtcaagaaaagagttt
tccttggatttgcagaacagcagcattgacatgcaagggctgcaggccttggtcagcctg
aggaatgtgacatcgttcagggcttccctcagtgacacagtcaggctctggaaatcttta
gaacagacaaaagactacgaactgctgaaagcgtccacagagaaatttgttcttgatccc
tttaaggcaaagacaatgaaggacatcagtgacctctccgaccttgtagagatgcaggag
aagatggtgaattgtgtgcaagaagcatctggttgcaccagctatgaaattcctgccatc
agaaacctcagaaaactggaatttgcgctgggtccagcatgtggccttcaaggactgcta
aaactcgtgaaaattcttgcagcatttccatcacttcagcatttagaccttgatgctctg
agtgaaaatggcataggagatgaaggagcaaagagtctatctgaagtctttccaatcttg
acatcactggaaacattaaatttatcacagaataaaataacagacctgggtgcagagagc
ctcgctgcagctctcccttccttgtcttccttaaaaacactaagcttgtacaataacaac
atttgtgattttggagcagaaaatctggcaaaggttcttcctgccatgacatctttaaga
gtgctagatgttcagtataacaaaataactggtgttggagcccagcagctgactgacagc
ctacgacaatgtccccatatgaagaacctggtgatgtggaatcccaccattccctatgga
gttcttgaacatcttcaccagctggaccccaggatcagtgtgtag
DBGET
integrated database retrieval system
