Geospiza fortis (medium ground-finch): 102040755
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Entry
102040755 CDS
T03755
Symbol
LIMCH1
Name
(RefSeq) LIM and calponin homology domains 1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gfr04990
]
102040755 (LIMCH1)
Domain-containing proteins not elsewhere classified [BR:
gfr04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
102040755 (LIMCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
LIM
NMB1110_3rd
Motif
Other DBs
NCBI-GeneID:
102040755
NCBI-ProteinID:
XP_014166398
LinkDB
All DBs
Position
Un
AA seq
1586 aa
AA seq
DB search
MRKETEDIESPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPD
VVLRGSSDGRGSDSETDLPQRKMPDVKKDDMLARRTSHGEPKSAVPFNQYLPNKSNQTFY
VPAPLRKKKAEREEYRKSWSTATSPLGDRPFSKPHPETIEEELNETSGLCEKEKLGSMAP
EASSLKNQLGVNQGAENSIDQSPSCSAKETSAPKGKDVEEIRKLRRLEQAGIKVMSAAER
YGSKKPICEDSGSTPDIILRKDNPFMTHYQGKDSGSEDEAASRVPDLEKDDFATRRARMN
QPKHIVPFNSFLIGPYTSKEKGKPEDVKKPLQMEKKEHARRRRVHMTSVRQTVTSKENPL
LQNEKTESEEEQQVKELDNERDDLVKRKLMQSQSILPQLQEDVLFVNASITKADLETWKR
LKLSGEPSEEDFRCSSNTLPPTDTTVKAVAHDDFAVRKTRANRKAGSPKQKFVHFGPVTE
IDQQKWDKLVIGRASSKSGTEEESKKDGVESLSGVESSPLTTAVSLGLAEYSSEVSEPEN
ESSEGGVKSGTDDSCRRTPFPVPASDVISEEQTPWSLNKQQESAKEECDRNLPDIERDDM
LVRRMGTFPRRTTSSIPINCPPLSVAPYLLQQQQQEEAVAREKDLKTLQERESTVTQEES
QEQPEIPQLQSDGTENKMKFPDPQRDDMLARRTGAFLKQPGPSVKQFLPMPFSQQQNKQG
TATELEKKTTRPEKCPQVYTNSSGKPAIEPPQEQQQGQDSLPPKGEDEVISTAQVAEDGN
SEVHLGQTSKLQEVPEKNKMETLSSKDEHLQTFGPRTAVSDDAESMSMFDMRCEEEAVAQ
PHSKARHEKLQSVHNQLKEDETRWQDDLARWKSRRRSASQDLIKKEAERKKMERLLAGEG
TNERRKSIKTYREIVEEKERRERELHEAYKNAKTQEEAESILQQYTERFTISEAVLERLQ
MPKILERSHSVEPNSPLKDPNPLRYLRQQSLPAPKFTATIEATIVPTTELEPSSSTGRTS
PSKSVSKAVPMLTPKPYSQPKNTQEVLKNFKVDGKVNMNGENVNGTEEKDKECTTVIFTP
SPTRSVKFDGVARGDKTPVELKKDPPSVELSLQRPATQSVHKEPTASPVELDGADSLQAE
PSPSSVTPASPECPSPDQKQFKSTAACSSPVVKRLEFLPSPVPSEETASSKKDVKKAEIE
QQNEAELPPTQEGIKAKALEEKGSLVLPFLKKLPETSQVTLHNSGLQADSDTGDKSNRFN
FWSWDPEEERKRQERWQHEQERLLQEKYQKEQYKLKEEWEKAQREVEEEERRYYEEERKI
IEDTVVPFIVSSNSAELLSSSSSTTEGNKTVNSTDSNSSPGEGKQKEVPKQKKLLWEQDS
MSPLKSKESELWQEKRSGNQVLSGYPGTGILKGGSEQEHHMPGMERSSPARLNLPLTQDE
NVSWNQQLLTKRSPQCAEDVRQRPFLGQTVGQQPSSAREARRAGYHENFRSGPSSPCSPA
ALSHSPNRSVSGKKLCSTCGLPLGKGAAMIIETLGLYFHIQCFRCGVCKGQLGDAASGTD
VRIRNGLLNCNDCYIRSRTAGQPTTL
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggaaacagaggatattgagagccccaagcgcagcattcgtgacagcggctac
atagactgctgggactcggagcgcagtgattccctctccccacctcgccacggcagagat
gattccttcgacagtctggactcctttggctcccgctcgcagcagacaccgtctccagat
gtagtgctcagagggagtagtgatgggagaggaagtgactcggaaactgacctgccacaa
agaaagatgccagatgtgaaaaaagatgatatgttggcgaggcggacctcacatggtgaa
cctaaatcagctgtgccttttaaccagtacctcccaaacaagagtaatcagactttctat
gtacctgctccgcttcggaagaagaaagccgaacgagaggagtaccgaaagagctggagc
acagcgacgtcaccgctgggagacagacccttcagcaaaccccaccctgaaaccatagaa
gaagaactgaatgaaacatcaggactgtgtgaaaaggagaaattgggctccatggctcct
gaagcaagctcccttaaaaatcaattaggtgtgaatcaaggtgcagaaaactccatagac
cagtctccttcatgtagtgcaaaagaaacatcagcacccaaggggaaagatgtggaagag
atcagaaagttaagaagactggaacaagctggcattaaggtcatgtcagcagccgagcgc
tacggcagtaaaaagccaatatgtgaagacagtggaagcaccccagacatcatccttcgc
aaggacaaccccttcatgacacattatcaaggaaaggattctggttcagaagatgaagca
gccagcagagttcctgatttagaaaaggatgactttgccacccggagagccagaatgaat
caacccaagcacatagttccatttaactcctttttaattggaccctatacaagtaaagag
aaaggtaaaccggaagatgttaaaaagccattgcagatggaaaaaaaggaacatgcaaga
agaagacgggtgcacatgacatcagtaaggcaaacagttacaagcaaagagaacccactt
ctacaaaatgagaagactgagtcagaggaggaacagcaggtgaaagagcttgataatgag
agagatgatttggtaaaacggaaattgatgcaatctcagagcatccttcctcagctacaa
gaagatgtgctttttgtcaatgcctctataacaaaagcagatctggagacctggaaaaga
ttgaaactgtcaggggagcccagtgaagaagatttcagatgctccagcaacactctgccg
ccaactgacaccacggtgaaagcagtagcccatgatgattttgctgtccgcaaaaccaga
gcaaacagaaaggctggtagccccaagcagaagtttgtgcattttgggccagtaactgag
attgatcaacagaaatgggacaagcttgttattggcagagcttcatccaagagtggaaca
gaagaggaaagcaagaaagacggtgtggaaagtctctctggtgttgaaagctctccttta
accactgctgtcagtcttgggttggctgaatacagcagtgaagtatctgagccagaaaat
gagtccagtgagggaggagtcaagtcaggtacagatgactcttgcaggagaactccattt
cctgtaccagcttctgatgtcatctctgaggaacaaaccccatggagtttgaacaaacag
caagaaagtgccaaggaagaatgtgacaggaatttaccagatattgagagagatgatatg
ttggttagaaggatgggaacttttccgaggcgtaccacaagctccattcccataaattgt
cctcccctgtcagtagctccttatctgctgcagcagcagcagcaagaggaggctgtagct
cgtgaaaaggatttgaagactctacaggaaagagaaagtactgtcacacaagaagagagc
caagaacagcctgaaattcctcagctgcagagtgatggaacagaaaacaaaatgaaattt
ccagaccctcaaagagatgacatgttagccagaagaactggagcttttcttaaacagcct
gggcccagtgttaagcagttccttcccatgccattttcacagcagcagaataaacagggc
actgctacagaacttgagaagaaaaccacgaggcctgaaaagtgtccacaagtctacact
aatagctctggaaaacctgcaatagaaccaccacaagaacagcagcaagggcaggacagt
ctcccacctaaaggagaagatgaggttattagtactgcccaagtggctgaagatggcaac
agtgaagtccaccttggtcaaacatctaagcttcaggaggttcctgagaaaaacaaaatg
gaaacactttcatccaaggatgagcatctgcaaacattcggccccagaactgctgtgtct
gatgacgcagagagtatgagtatgtttgacatgagatgtgaagaagaagctgtggctcag
cctcatagcaaagctcgccatgagaagctgcagagtgtacacaaccagctgaaagaggat
gagaccagatggcaagatgacctggctcggtggaagagtcgtcgaaggagcgcttcacag
gatttgattaaaaaggaagctgagagaaagaaaatggagaggttattggctggagaggga
acgaatgagcgcaggaaaagcatcaaaacctaccgagaaatcgtggaggagaaagagaga
agggagcgggagcttcatgaggcatacaagaatgcaaagacacaggaggaggctgagagc
atcctccagcagtacactgaaagattcactatcagtgaagctgtccttgagcgtttgcag
atgccaaaaattctagaaagaagccattcagtggaaccaaattccccactgaaagaccca
aatcctctgagatatttaaggcaacagtcacttcctgctccaaaattcactgccacaatt
gaagcaaccattgttcccaccactgaactagagcccagcagttcaacaggacgcacatct
cccagcaaaagtgtctccaaggctgtgcctatgctaacacccaagccttattcacaaccc
aaaaatacacaggaagttttaaagaactttaaggtagatggaaaagtcaacatgaatgga
gaaaatgtcaacggcacggaagaaaaggataaagaatgtacaacagtaatatttacccct
tcaccaaccagatctgtgaaatttgatggcgtagccagaggggacaagaccccggtagag
ttgaagaaggaccccccaagtgttgagctcagtttacagaggcctgccactcagagtgtg
cacaaagagccaacagcctccccagtggaactggatggagctgacagcctgcaagccgag
cccagccccagcagtgtgacacctgcctctccggagtgcccatccccagatcaaaagcaa
ttcaagtcaactgcagcttgttccagccctgttgtgaagagattagaatttcttcccagt
cctgtcccttcagaggaaactgcttcaagcaagaaagatgtgaagaaagctgaaatagag
cagcagaatgaagcagagctccctcctacacaggaggggattaaagcaaaagccctggaa
gaaaaggggagcctagtgctgccatttttaaagaaacttcctgaaaccagccaagttact
ctgcataactctggtctacaagctgattctgatactggtgataaatcaaatcgtttcaat
ttttggtcctgggatccagaagaagagcgcaagcgccaggaaagatggcagcatgagcaa
gaacgcttgcttcaggagaagtatcagaaggagcagtacaagctgaaagaggaatgggaa
aaggcccagagagaagttgaagaggaggagcgtagatactatgaggaggaacgaaagata
attgaggatactgtagttcccttcattgtttcttcaaactctgctgaactcctctcgtcg
tcttcgtctaccactgaaggaaacaagacagtgaactcaactgattcaaacagctctcca
ggggaaggcaagcaaaaagaagttccaaagcagaaaaagcttctctgggagcaggacagt
atgtcacctctgaaaagcaaggaaagtgaactctggcaagaaaagaggagtggaaatcag
gtgctctcaggatacccagggactggtatcctgaaaggaggaagtgagcaggagcaccac
atgccggggatggagcgcagctcacctgccaggctgaacctgcctctgactcaggatgag
aatgtctcctggaatcagcagttgctgacaaagcgatctccacagtgcgcggaggacgtc
cggcagagaccattcctgggccagaccgtgggacagcaaccaagctctgcaagggaagcg
aggagggcaggctatcatgagaacttccgatctgggccgtcatctccctgctctcctgct
gctctcagtcactcacccaacaggtctgtcagcgggaagaagctttgttctacctgtggt
ctccctcttggaaaaggagctgccatgattattgagacactcggtctttatttccatatt
cagtgcttcaggtgtggggtttgcaagggccagctgggagatgcagcgagtggcacggat
gtcaggatcagaaatggccttctgaactgcaacgattgctacatccgatccaggactgct
ggacagccaactacattgtga
DBGET
integrated database retrieval system
