Geospiza fortis (medium ground-finch): 102040759
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Entry
102040759 CDS
T03755
Symbol
PNN
Name
(RefSeq) pinin, desmosome associated protein
KO
K13114
pinin
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03013
Nucleocytoplasmic transport
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102040759 (PNN)
03015 mRNA surveillance pathway
102040759 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102040759 (PNN)
03041 Spliceosome [BR:
gfr03041
]
102040759 (PNN)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102040759 (PNN)
Spliceosome [BR:
gfr03041
]
Complex C
Other components
EJC/TREX
102040759 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
102040759
NCBI-ProteinID:
XP_005417663
UniProt:
A0A6I9HDE4
LinkDB
All DBs
Position
Un
AA seq
691 aa
AA seq
DB search
MSLRQPPSLIRRAVRQSFPLVGRPGCQSAPGLCDWPPQNRLLALAGPGGGRGRGSLLLRR
GFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATSKER
TRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLEVQA
EEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHL
FYIPGRMCPATQKLMDESQKKMNALFESRRNEFAEQINKMEARPRRQSMKEKEHQEVQNE
EKKEEQNKEQEEGKVAQQVEEMETGNQHNDVEMEEVGEEKGKIGSGSGHSDAEKEQEEDE
QKHDIEMKVEEPTEVRENDKQQDGQHEEVTVVKEESENIQPVDNDQDVAEMNEADSVEPV
ENENGKEIEPETECDAQPEKVCNVPSPKKEKGIKTENNAELEETQEKTSEGQTESVAEAL
SQPQSVPLAQSPQLSQSTQDTEPQTDKDENAVVSVKVAEAQAEQNQTPSAESKSKTRSRS
RGRAGNKTGHTRSSSSSSSSTSSSTTSASSSSTGSSSSRSSSTSSSTTSGSTSRDSSSSS
SSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGSRDTKSSKDKSSRSD
RKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcactccggcagcccccttcattgattcgtcgagctgtcaggcagagctttccgcta
gttgggcgtccgggatgccagtctgcccccgggctctgtgattggcccccccaaaacaga
ctgctagccctcgcaggccccggtggaggtagagggcgtgggagcttattgctaaggcgt
ggattctcggatagtggaggaggacccccagccaagcagagggatcttgaaggtgcatcc
agtaggctgggtggagaacgtcggacaagaagagaatcacgccaagaaagcgacgcagag
gatgatgatattaaaaagccagcgttgccatcttctgttgttgctacctccaaagagcga
acacgtcgagaccttatacaagatcaaaatatggatgagaaaggaaaacaaaggaatcga
cgtatatttggcttgctgatgggcactcttcaaaaatttaaacaggagtccacagttgct
attgctactgagaggcaaaagagacgacaagaaattgagcagaaacttgaagtgcaggca
gaggaagagagaaagcaagttgaaaatgagaggcgagaactgtttgaagaaagacgtgct
aaacagacagagctgcggttgttggagcaaaaggttgagcttgctcagttgcaagaagaa
tggaatgaacataatgctaaaataattaaatacataagaacaaagacaaaacctcattta
ttctacatacctggcagaatgtgtcctgctacgcagaagctgatggacgagtcacagaaa
aagatgaatgcactctttgaaagcaggagaaatgaatttgcagagcagattaacaaaatg
gaggccagacccagaagacaatctatgaaggaaaaagaacatcaggaggtgcagaatgaa
gaaaagaaggaagaacagaacaaggagcaggaagagggtaaggtggctcagcaggtggaa
gagatggagacaggtaatcagcacaatgatgtagaaatggaggaggtaggggaggaaaag
ggaaaaataggttcaggttcagggcatagcgatgcagaaaaagaacaggaagaggatgag
cagaaacatgacatagagatgaaagtagaagagcctactgaggtgagggagaatgacaag
caacaggatggtcagcatgaggaggtcacagttgtaaaagaggaaagtgaaaacattcag
cctgtggataatgatcaggatgtggctgaaatgaatgaggcagatagtgtagaacctgta
gaaaatgaaaatggcaaagaaatagaaccagaaacagagtgtgatgctcagccagaaaaa
gtgtgtaatgttccttctcccaagaaggagaaaggtatcaaaacagaaaataatgctgaa
ctggaagaaacacaggagaaaacatctgaaggtcagacagaatctgtggctgaggctcta
tctcagccacagtctgtgccactagcacaatcacctcagttgtctcagtccactcaggat
acagagccccagacagacaaggatgaaaatgctgtggtgtctgtaaaggtggctgaagcc
caggcagagcagaatcagacaccaagtgcagaaagtaagagtaagactaggagtagaagc
aggggtagggcagggaacaaaactggtcatacccgtagcagcagcagcagtagcagtagc
acttccagcagtactaccagtgcaagtagttccagtactggcagcagttccagtcggagc
agttccaccagcagcagtactacaagtgggagtacgagcagggacagtagcagcagcagc
tcgagcagtagtgagagcaggagtcggagccgaggcaggggccataacagagatagaaaa
cgcagaaggagcacagacaggaagcgaagggatgcttcaggagtagatagaagtcacaag
tcctcaaaaggtggtagtagagatactaaaagctcaaaggataaaagttcaaggtctgac
agaaagagatctatatcagaaagtagtcggtcaggcaagagaacttcacggagtgaaaga
gaccgtaaatcagacaggaaagacaaaaggcgttaa
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