Geospiza fortis (medium ground-finch): 102040795
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Entry
102040795 CDS
T03755
Symbol
HBS1L
Name
(RefSeq) HBS1 like translational GTPase
KO
K14416
elongation factor 1 alpha-like protein
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102040795 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102040795 (HBS1L)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102040795 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Astrovir_pp_1
AAA_22
DO-GTPase2
GIP1_N
Motif
Other DBs
NCBI-GeneID:
102040795
NCBI-ProteinID:
XP_014164380
UniProt:
A0A6I9ZAC5
LinkDB
All DBs
Position
Un
AA seq
743 aa
AA seq
DB search
MTGASLAPQNRANFTVLPAFSSRRKVPGDSGTLALKRPPRRLGTARHGAPPGRDSGSPPA
AHQRCAARQDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPTTSAEPLEEEYGYEGTD
AAAADCFTPTHQLTEVDRAHLNSCLDQMREVLAESIPEQTMVQAVLDAKFDVQKALDLVL
SQGSKQNVKTKNKDAVILAKTTKGKTRDSQSARMESEIVPKIAKMTVSGKKQSMGFEVPC
AIAEENGHTNTPQKGLLPEDASVASGVLEAVSKSTPSSQVVQVSEEQNMVPTPGKKSSKA
KPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKK
AGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKVITLMDAPGHKDFIPNMITGAAQ
ADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
TSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGKCLLEQIDSFKPPQ
RSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLHDEPV
DWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKGFPVL
LHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALIELQTQRPVALELYKDFKE
LGRFMLRYSGSTIAAGVVTEIKE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgactggggcctcgctggcaccgcagaaccgagcaaacttcactgtactaccggcgttc
tccagcaggagaaaagtgcccggggattccgggacgctcgccctgaagcgtccccccagg
cggctcggcacggcacggcacggcgccccgcccggccgggacagcgggagtcccccggcc
gcccatcagcgctgcgctgctcgccaagactttgaagatgatgatgtgtatggccaatca
gtagaagatgattattgcatttctccttcaacagcagctcagtttatttactccagacga
gacaagccaaccacgtctgctgagccattagaagaagaatatggctatgaaggtactgat
gctgctgctgctgactgttttacacccactcatcagttgactgaagttgacagagcccat
cttaattcatgccttgatcaaatgagagaagttttggcagagtccataccagaacaaaca
atggtgcaagcagtactggatgctaaatttgatgtacaaaaggctttggatcttgtgctt
tcacaaggcagtaagcaaaatgtgaagaccaagaataaggatgctgtgattttagcaaag
actacaaaaggaaaaacaagggattcccagtcagccagaatggaatctgaaattgtgcca
aaaattgccaaaatgacagtgtccggaaagaaacaatctatgggatttgaagttccatgt
gcaattgctgaggaaaatggccacactaatacacctcagaaaggactgctacctgaagat
gccagtgtagcttctggagtgcttgaggctgtttcaaaatctactccttcatcccaagta
gtgcaggtttcagaagagcagaatatggtgcctactccaggaaaaaagtcaagcaaggca
aaaccacaaatagatgtgaaagcagagttggagaagagacaaggaggaaagcagctgctg
aatttggtggtaataggacatgttgatgcaggcaaaagtactttaatgggtcatttgctc
taccttttgggaaatgtgaacaaaagaactatgcacaaatatgaacaggaatctaaaaag
gctggtaaagcttcatttgcctatgcatgggtcttggatgaaactggtgaagaaagagaa
aggggagtgacgatggatgtgggtatgaccaaattcgagacaccaactaaagtaattaca
ctgatggatgctccaggccacaaagacttcattccaaatatgatcacaggagctgcacag
gccgatgtggcaattttggttgtggatgccagcagaggagagtttgaggccggatttgag
acaggtggacaaactcgagaacatggattattagtgcgctctcttggagtgacacagttg
gctgttgcagtcaataaaatggaccaggtcaattggcaacaggaaagatttcaggaaatt
acaagtaagcttggccaatttcttaagcaagctggctttaaggaatcagatgtggcctat
atcccaacaagtggccttggtggagaaaatctagtcacaaggggtcagtcgagtgacctc
acgcaatggtataaaggaaagtgtttgttggagcaaattgattctttcaagccaccacag
agatcagtggataaaccatttagactgtgtgttgctgatgtttttaaagaccaaggttca
ggattttgtgtgactggtaaaatagaagcaggctatattcaagttggagaacgacttctg
gcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcacgatgaaccagtt
gattgggctgcagcaggagatcacgttagtctcactttgaccggcatggatatcatcaaa
atcaatgtgggctgtgtattttgtgatcccaaggagcccattaaagtttgcactcggttc
agagctcgggttctcatcttcaatattgaggttccaatcactaaaggttttcctgtgctt
ttacactatcaaacagtaagtgagcccgctactattacaagactgttgagtgtcctgcac
aaaagtactggtgaagtgacaaagaaaaaacctaagttcttggctaaaggtcagaatgct
ctaatagaactacagactcaaagacctgttgctctagagttgtacaaagattttaaagag
ctggggaggtttatgttacgctacagtggttccactattgctgcaggagttgttacagag
attaaagaatga
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