Geospiza fortis (medium ground-finch): 102040849
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Entry
102040849 CDS
T03755
Symbol
SHH
Name
(RefSeq) sonic hedgehog
KO
K11988
sonic hedgehog
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
102040849 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gfr01002
]
102040849 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gfr00536
]
102040849 (SHH)
Peptidases and inhibitors [BR:
gfr01002
]
Cysteine peptidases
Family C46: hedgehog family
102040849 (SHH)
Glycosaminoglycan binding proteins [BR:
gfr00536
]
Heparan sulfate / Heparin
Morphogens
102040849 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Vint
Motif
Other DBs
NCBI-GeneID:
102040849
NCBI-ProteinID:
XP_014164838
UniProt:
A0A6I9Z937
LinkDB
All DBs
Position
Un
AA seq
393 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQVEPQRYLYLCLLTSLSN
PKGNRGVVRAGPGRPEPPGAARVPARARSSRAGHDIAVSRSAVTLSTAETFDPSPPFPCK
SVMERIYPLRIKLKRPAETFRGGIRDSEIYENSVAAKSGGCFPGSATVHLEKGGTKLVKD
LRPGDRVLVADTEGRLLYSDFLTFLDREDGSHKLFYVIETRQPRARLLLTAAHLLFVAPQ
QNQSETQPCSLLGWMASLRPPRMSLPGAISRECRPCSSTLKSQELLERCQELEAEFHARA
LLCETLTDGCGFSFLSTSSPAPLPTSKAWTWPG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcaggtagagccacagagatacctgtatttgtgtttgttaacctctctgagcaat
cccaaaggaaaccggggagtggtgcgggcagggccggggcgcccagagcctcccggcgct
gcccgcgtccctgcccgcgcccgctcctcccgtgcggggcacgacatcgccgtgtcgcgc
agcgcggtcaccttatcaacagctgagacgtttgatccttctccccctttcccctgtaaa
tcagtgatggagcgtatctatccactcagaattaagctgaaaagacccgcagagacattc
cgggggggaatccgtgactctgagatatatgaaaactctgtggcggccaaatccggcggt
tgcttccctggctcggccacggtgcacctggagaaaggtgggaccaagctagtgaaggac
ctgaggcctggagacagggtgctggtggccgacaccgaaggccgtctgctctacagcgac
ttcctcaccttcctggaccgcgaggacggctcccacaagctcttctacgtcatcgagacc
cggcagccccgggcccggctgctgctgacggccgctcacctcctgttcgtggccccccag
cagaaccagtccgagacacagccatgttctctgctgggatggatggcatctctacggcct
cccagaatgtccctgcctggggccatctccagagagtgtcgaccatgctcttccacgctg
aaatcccaggagcttctggagcgctgtcaggagctggaggccgagttccacgcacgagca
ctgctgtgtgaaaccctgacagatggatgtggtttctccttcctgtcaacctctagtcca
gccccacttccaacctccaaagcttggacatggccagggtga
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