Geospiza fortis (medium ground-finch): 102040942 Help Entry 102040942         CDS       T03755                                  Symbol SETX Name (RefSeq) senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism gfr  Geospiza fortis (medium ground-finch) Brite KEGG Orthology (KO) [BR:gfr00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:gfr03021]     102040942 (SETX) Enzymes [BR:gfr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      102040942 (SETX)     5.6.2.5  RNA 5'-3' helicase      102040942 (SETX) Transcription machinery [BR:gfr03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      102040942 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 UvrD-helicase Viral_helicase1 AAA_22 SLFN-g3_helicase ResIII AAA_16 DUF4164 SAS4 RNA_helicase Motif Other DBs NCBI-GeneID:  102040942 NCBI-ProteinID:  XP_014162612 LinkDB All DBs Position Un AA seq 2720 aa AA seqDB search MSTCRWCTQSGADTTEFLKRYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE DLWNLETSRLVAHMEKSMNEETGEDELFLVDEHGETPLSGYVGPNFENNLRVPLLEILKY PYLLLHEKVSELCVEVLCRMERSQDSFQVFEKYPGIYLFLVHPNEAIRRWAILTARNLGK VDRDDYYDLEEVLTCLFRVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFMRTKAEPDSDYGDDMMSCSQIVYNY NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFIPFVQSLM DLKDLGVAYIVEVIHYLCSEIKDILIERFQECDKISEFFLLILVSIVELHRSKKCLHLLW ISSQEWVEAVVRCATLPSRAFTRCSERAPGLFAKGSAASSLQGPSSVQHACVQLIRSLLK EGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSIKGKALSTSL AGGSSSSSTALPSVSTKQERNVCDDGYKTSGHERRDLCSPFVMSKEGRDCQENPFHRRRN AWEEECRDACRSSTSCTSTEGLLMNIKKEPNDFTDQEFVFPQNSLATKVWGKVQENRSSD LVAGKCNMDDQCFSSNTEHSDFRRGRELEVKHRAESKTPPCLSAQTHLDSPSSRSCKSMQ ETSANSVFQSRLVPTKQESKEASLDSSNFSRNEAGLQGKEDDSTLLLGRDDTSLKKVSTE EKSGPSILSFFKRSTTVQTSNQEQPNLNDLDKYDCKNQFSETFCRDKISACGYFPFSSEN KRDVIRPLSVKHESSDRLFEFSEYFRRENSSVGKKEENFVKTVSEDDDLSDSQVDRELSK LSLAAYAKSLNFPIASNQESSVYHNVSCDIKRKVKGSVRSSSEGQSTKCPSGGDRPSNQV IVISDSSDEEKGVAEKEEAKTKNENVCAEPSSTSSSTSDTDPKREPKSPGSPLLLDDCES QYFEFETEDEVFSAWQDTQAYAVEATQEYKQDRVSPAPETSNSDDCQNDNLNEWGYDLPY FSDDSMEVAASSIGKQTEDTSYQKEADDTKEATNSTLEESVGKEEAKGQLEKCADKVTAK GFTLDSKVPEPTASTSPISLASKLALKKKSTSPQKIAAKCKSALAVQRSPKKPPVVKTAK NKTPLQSTTERSQPGRSMPAVVPPRKVRQSPAPASTAEKLGLKKGPRKAFDLSQPSLESL ALLRSHGKAAGRIGVTQKKRTKQIEAQRLSVKGNKKLLACQDRQYLRPKRSVKKFAGSLE SRNKVTKTSAKPVEQKPQSFELAAIKESVENQREKKREEAACPSASERKFESLSVEEVAN SSKMPRSSDWNAKWEGNSVVVPPVPMDSSLSSTVLEGDKDESSGKGCTVLPECEMKTSKQ NGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAAIGSKSPEEMDVDESLQQNELS AVAKCKDKDCMEQVEKPGEYCSKHAATSAGADHVFAKPSCPPPKAQKPSTTKIFSSASSS RNAAFSKDLEDVRKFPPPSKSKVNAAKLAVVRPPLYPKPAPAGNPTSKSPSFQPLSSSNV LQSQNKHYDNASNITRRPGRETSSSFLGQQRDYSIFVNQVLKWTYEMFENFIYFGTPNHL LQTIVAAVPPHFQGYNEYFDTFFPLMMLNAFETLAQEWVENQKVREKGYYFYLEKFSADM NTARFTAHLRESDLARQLHPKEDDLILLKVHKEKDTFGEESHTEYHTVNHVGLVTCFARA SVSANRQKEQQTACRLTVQTQGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLLSRSPLVR PIINPSYNDFCPRDLPVASGSAVSYMNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPP GTGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKIIVAFK EKCQNKQEPLGNCGDIKLVRLGPEKSINNEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKE ALDQKLDMLSRERAMHRCEKRESQMLNDEIGKLAKERQQLASQLKEVRVHSQKVQADIIL ESDIICCTLSTSGGSLLESAFSRQGLDRFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVG DPKQLPPTVKSVKAQQYGYDQSLMARLQKHLEEQVQRNMLHSLPVVQLTVQYRMHPDICL FPSKYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLVMEL IRTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQGREKDCII VSCVRANSSEGSTPPHVQANSFKGSIGFLASLQRLNVTITRARFSLFILGRLQTLMGDEN WNHLIQDAQKRGAIIRATEKNYKKEALRILKLRPPAQPPSKGGTMTPPVVQAASSSGKRS EPGNSGNSPRELAAGPGHAVPQGSXGPKQPAGTAAADSNRGNSKRSSSAPAPSGAAALGA VPEKPRDPRLASLASRAEAKGKEQPLNSPRSAPSTPGSAAQQGLHVSSAARDQVCRTENA RKAQQTAGQGSVLPPAPPSAQHEGDRRAAVSKSGSRAPREGDQSSGSEWNKDSHGLSRRP SQESPENTESSSAKRRKFFH NT seq 8163 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgagttcctgaagcgc tatgctgctcaaaggctgtcccaggaagattttgaaggctccaatgatgatctctgttac tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagattgcatgag gacctgtggaacttggaaacctcccgccttgttgcccacatggagaaatccatgaatgaa gaaacaggagaagatgagctgtttctggttgatgagcatggggaaacacctctatctggt tatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggagatactgaaatac ccctacctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgcagaatg gaacgaagtcaagactcttttcaggtgtttgaaaaatacccaggaatttatctctttttg gtacacccaaatgaggcgattcgtcgatgggccatcctcacagcaaggaatttgggaaag gttgacagggatgattactatgacttagaggaagtgctgacttgtttgttcagagttatt gagttggggctttttgagaacccagatatttacagctcttcgatgtttgaaaagggtaaa ctcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctggga atttgcatgttgctgtctgtgctggaagaacaagctatggactctctgttactgggccca gacaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat gattccactgaccccttctggcctgccctacattgtttcatggttattttggatcagctt gggtctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac agtgtcagctacaacaacgaaatcaaaaatattcgcagtagttttatgaggacaaaagct gaaccagactcagactatggtgatgacatgatgtcttgcagtcagattgtgtataattat aacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc cccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga gacatgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctcatg gatctcaaggacttgggcgtagcctatatagtagaggtcatccactacctctgctcagaa atcaaagatatcctcatcgaaagattccaggagtgcgacaaaatctccgagttcttcctc ctcatcttggtgtccattgttgagctgcacagaagcaagaagtgcctgcatttgctgtgg atcagctcccaggagtgggtggaggcagtggtgaggtgtgccacgctcccaagcagagcc ttcactcggtgcagcgagagggctccggggctgtttgccaagggctcggccgcgagctcc ttgcaggggcccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag gagggctaccagatcggccagcacgccctctgcaagcagtacctggacaaactgaacctc ctcctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacccaggagctg cagatgtgtttaaagcaagttataagaagtataaagggcaaagcgctgagcacctctttg gctggagggagcagttcaagctcaacagctttgccgagtgtctctacaaagcaggagagg aatgtgtgtgatgatggatacaagacgagtggacatgagaggagggacctttgttcacca tttgtcatgtcaaaggaaggcagagattgtcaagagaaccctttccataggagaaggaat gcctgggaagaggaatgtcgagatgcatgcagaagctcaacatcttgcacatccacagaa ggcctcttgatgaatattaaaaaagagcctaatgacttcacagatcaggagtttgtcttc ccacagaactctttggcaacaaaagtatgggggaaagttcaggaaaataggagctctgac cttgtggcagggaagtgcaatatggatgatcagtgcttcagttcaaataccgagcattca gatttcaggagaggcagagagttagaagtgaaacacagagcagaatccaaaacaccaccg tgtctgtctgctcagactcatcttgattctccatcttcaaggagttgcaaaagtatgcaa gagacaagtgcaaacagtgtgttccagtccagactggtccccactaaacaggagtccaag gaagcatcactggattcctctaacttctctagaaatgaagctggcctgcaagggaaggaa gatgacagtactttgcttttagggcgtgatgacacctcgctgaaaaaagtatcaacagaa gaaaaatcaggtccatcgatactgtctttctttaagaggagcactaccgtgcaaacttca aaccaggagcagcctaatttaaatgatttggataaatacgactgcaaaaatcaattttca gagaccttttgtagggataaaatttcagcgtgtggttattttccatttagctctgaaaac aagagggatgtgatcaggccactgtcagtgaagcatgaatcaagtgacaggttgtttgag ttttcagaatatttcaggagggaaaacagttcagtggggaagaaagaggagaattttgtg aagacggtttctgaggatgatgatttatcagactcccaggttgatagagaactcagtaaa ttatctttagctgcttatgccaaaagtcttaattttcccattgcatccaaccaggagagc tcagtgtaccacaatgtgtcttgtgatattaaaaggaaagtgaaaggttctgtaagatct tccagcgagggccaaagtaccaagtgtcccagtggtggagatcgccctagcaatcaagtc attgtaatttcagactcttctgatgaagaaaaaggtgtggctgagaaggaggaagcaaaa accaagaatgaaaatgtgtgtgcagagccatcttcaacttccagcagcacttctgatact gaccccaaaagagaaccaaagtctccaggctctcccctgttactggatgactgtgagtct cagtactttgaatttgaaacagaagatgaggttttttcggcttggcaagatactcaggcg tatgctgtggaagcaactcaggaatataaacaagatcgtgtttcaccagcacctgagaca agtaattcagatgactgccagaatgataacttaaatgagtggggctatgatctgccttac tttagtgatgactccatggaagtggcagcaagctcaataggaaagcagacagaagatact tcttatcagaaagaagctgatgatactaaagaagcgactaattcaaccttggaagaatca gttggcaaggaagaggcaaaaggtcaactggagaaatgtgcagacaaagttactgctaaa ggcttcaccctggactcaaaagtgcctgaacccaccgcatctacatctcccatctcatta gcttcaaagttggccctgaagaagaagagcacaagcccacagaagatcgcagcaaaatgt aaatcagcgctggctgttcagagaagtcctaaaaaacctcccgttgttaaaacagccaaa aataaaacaccactccaaagcacaacagaacgttctcagcctggcaggtcgatgcctgct gtggttcctccaaggaaggtccggcagagccctgctccagcatcaactgcagaaaagctt ggcctaaagaagggtccccgcaaggcgttcgacttgtcccagccctccctggagagcctg gctctgctgcgcagccacggcaaagctgcaggcaggattggagtcacacagaaaaagaga accaaacagatcgaggctcagcgtttgtctgtgaaaggtaataaaaaactgctggcctgc caagaccgacagtatctaaggcccaaaagaagcgtgaaaaaatttgcaggaagtttggag agtagaaacaaagttaccaaaacgtctgcaaaacctgtggaacaaaagcctcaaagtttt gaactggcagctattaaagaatctgttgaaaaccaaagggagaaaaaaagagaagaggct gcttgtccttctgccagtgagagaaaatttgagagcctctctgtggaggaggtggcaaat tcctctaaaatgcctcgttcttcagactggaacgccaaatgggagggtaacagtgtcgtg gttcctcctgtccctatggattcaagtctctcttccacggtacttgaaggtgataaagat gagtcttcgggaaaaggttgcactgtcctgcctgagtgtgagatgaaaacttcaaagcaa aatgggtgtaaatcagatgaaagcagtgacgaaggtgacgataatctgtttttaactcag ttagatcctgtggatatggagttatgttctcaagaggaaagtgttcaagatgctgctata ggtagtaagagcccagaggaaatggatgttgatgaaagccttcagcagaatgaactctca gctgttgcgaaatgtaaggacaaagattgtatggaacaggtggaaaaacctggagagtac tgcagtaaacacgcagccaccagcgcaggggcagatcatgtgtttgccaagccttcttgc ccaccacctaaagcacaaaagccttccactaccaaaatcttcagctcagcaagttcttca cggaacgcagccttcagcaaagatctggaagacgtcagaaagtttcccccaccttcaaaa agcaaagtgaacgcagccaaactggcggtggtcaggccaccgctgtatccaaaacctgca ccagcaggaaatccaacgtccaaatctccaagtttccaaccccttagttctagtaatgtt ctccagtcacaaaataaacactatgacaatgcttcaaatattaccagaaggcctggccga gaaacctcctcctcttttcttggccagcagcgcgattacagcatttttgttaaccaagtc ctaaagtggacttatgaaatgtttgaaaacttcatctactttggaactccaaatcatctt ctgcagaccatagtagctgctgttcctccccattttcagggctacaatgagtattttgac acattttttcccttgatgatgctcaacgcctttgaaacactggcacaagaatgggtagaa aaccagaaagtaagagagaaaggttattacttctacttagagaagttttctgctgacatg aatacagcacgttttacagctcatctacgagagagcgatttggcaaggcagcttcacccg aaggaggatgacttaatccttttgaaggtccacaaggagaaggacacttttggggaagaa agtcatacggagtaccacacagtgaatcatgttggccttgtgacatgttttgctcgtgca tctgtctctgcaaatagacaaaaagagcagcaaactgcctgtcgtcttactgtacaaacc caaggcaatttgtcattcttcatccataagcaagtgaagtgtgtggtggttggctccctg gtgaccacacacagaaaattcaaaggtctcctgctgctgagcaggagccccctggttaga cccatcataaatccaagttacaatgacttctgtcccagagatctgcctgttgcctcaggg agtgctgtttcatatatgaatgaatacaatgaagatcagaagagagccattgagacagct tatgccatggtaaagcagcaccctggacttcccaagatctgccttatccatggaccacct gggacagggaaatcaaaaactattgtaggactcctgtcccgtgttttgagagaaaacact aggaatgagaaaacagctcggaaaaaaaattccaagattaagccaaaccgttttctagtg tgtgcaccatcaaatgctgctgttgatgaactcatgaaaaagatcatcgttgcatttaag gaaaaatgccaaaacaagcaggagcctttgggaaattgtggtgatatcaaattagtgcga cttggtcctgaaaaatcaatcaacaatgaagtgcggggattcagcctggataagcaagtt gaacacagaatgaaacgaaagccaggtgactgtgaccaggacattcagaagaagaaggaa gctctggatcagaagctggacatgctctctcgagagcgcgccatgcacagatgtgagaag agagagagtcaaatgttaaatgatgaaattggcaaacttgcaaaggagagacaacaactc gcttctcagctaaaggaggttcgggtgcactcccagaaagtgcaggcagacattatcctg gagtctgacatcatctgctgcacgctgagcaccagcggggggagcctgctggaatcggcc ttctcccggcagggcctcgatcgcttcagctgtgtcatcgtggatgaggcagggcagtcc tgtgaggtggaaacactgattccactgatccatcgctgtaataaacttgtcctggttgga gatcccaaacagctccctcctactgtcaaatcagtaaaagctcagcagtatggctatgac cagtctctgatggcccgtctgcagaagcacctggaggagcaagtgcagaggaacatgctg cacagcctgcctgtggtgcagctgacagtgcagtacaggatgcacccagacatctgcctc ttcccatccaaatatgtgtatggcaggactctaaaaactgccaaggcaatagaggagaac agatgttcttcagaatggccattccagccctacctgatttttgatgtagctgatggtcgt gaggagcgagacaatgactcttacagcaatcctcgggaagtgaagctggtgatggagtta attagaacaattaaagaaaaaaggaaggatctgggccttcgtcgcattggaataattacc ccttacagtgcacagaaaaagaaaatccaggaacaactggacagtgtgtttaagaataac agcccaggagaagtggacacggtggatgcgttccagggccgggagaaggattgcatcatc gtgtcctgtgtgagggcaaacagctccgagggctccactccaccacatgtgcaggcaaac agcttcaaaggatccattgggtttctggcgagcctccagcgcctgaatgtcaccatcacc cgagcccggttcagcctcttcatcctgggccggctgcagacgctcatgggagatgaaaac tggaatcacttgattcaggatgctcagaaaagaggtgccattattagggcaacagaaaaa aattacaagaaagaagctctcaggattttgaagctcaggccaccagcacagcccccatcc aaaggagggacaatgacacctcctgtggtgcaggctgcttcttccagtggcaagaggagc gagcctggaaattctgggaacagcccacgggaacttgctgctggccctggccatgctgtg ccccagggaagctgagggcccaaacagcctgcagggactgcagctgcagattccaacagg ggcaattccaagaggagcagcagtgcccctgcaccctcaggggctgcagcacttggtgcc gttccagagaagccccgggaccccaggctggccagcctggccagtcgagctgaagccaaa gggaaggagcagcccttgaacagccctcggtcagccccgagcacaccaggatcagcagca cagcaaggcctgcatgtgtcctcagctgccagggatcaggtttgcagaacagaaaatgcc aggaaggcccagcagacagcaggacagggcagtgtgctgcccccagcccctccctcagcc cagcacgagggtgaccggagagcagccgtgtccaaaagcggttccagagcccccagggag ggcgatcagagcagtggcagtgagtggaacaaagactctcatggtttgtcaaggagacca tcccaggaatcaccagagaacacggaatcaagctctgccaagagaagaaagttctttcac tga

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