Geospiza fortis (medium ground-finch): 102041019
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Entry
102041019 CDS
T03755
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102041019 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102041019 (SMARCC1)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102041019 (SMARCC1)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102041019 (SMARCC1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102041019 (SMARCC1)
PBAF complex
102041019 (SMARCC1)
GBAF(ncBAF) complex
102041019 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
102041019
NCBI-ProteinID:
XP_005428083
LinkDB
All DBs
Position
Un
AA seq
949 aa
AA seq
DB search
MTYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILG
AAYKYKNEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNCLSRPTIYLIPDMELKLANK
LKDIVKRHQGTVTEEKSKATHHVYPSPTSVDDDEWLRPVMKKDKQVLVHWGFFPDSYDTW
VHASEIEAEIEDAPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKSVSFRQRISMK
NEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAALYGKRRGQKEEDEQ
EDLTKDMEDPTPVPNIEEVALPKNVNPKKDSENTPVKGGTVADLDEQDEETVATGGKEDE
DPNKGDQSRSLDAGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLINYQVDPESR
PMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGLRTD
IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPEEPEKMDGAEEEKMETE
AEGQPAEKVESKAESEPEEGEKVPEGESERNVDKEPESEGAAEPKTEEKEAEENKENVDG
SKDKEAEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQM
KKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQ
NPQQPHQHPSGPGITPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHPPQP
NT seq
2848 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacgttcaggcggatgctcctaccaacaaaaccttggctgggctggtggtgcag
ctgctgcagttccaggaagatgcctttggaaaacatgtcaccaatcctgccttcacaaag
cttcctgcaaagtgcttcatggatttcaaagctggaggtacattatgtcacattcttggt
gctgcttacaaatataagaatgaacagggctggaggaggtttgacctgcagaatccctcc
cggatggaccggaacgtggagatgttcatgaccattgagaaaacgctggtgcagaacaac
tgtctgagcagaccaaccatctacctcattcctgacatggagctgaagctggccaacaag
ctgaaggacattgtcaagcgtcaccagggaacagtcactgaagagaaatccaaggccacc
caccacgtgtatccaagtcctacctcagtggatgatgatgagtggttgagacctgtgatg
aaaaaggacaagcaggtgctggtacattggggcttttttccagacagctacgacacctgg
gtccatgccagcgagatcgaggcggagatcgaggatgcgcccatccccgagaaaccctgg
aaggttcatgccaagtggattctggacacggacgtgttcaatgagtggatgaatgaggag
gattatgaggtggatgagaacaggaaatccgtcagcttccgccagaggatctccatgaag
aatgaggagcccgtgaggagccccgagaggagggacaggaaagcagcagccagcacaagg
aagaggaaacactccccttctccaccccccactcctgtggagtccaggaaaaagacagga
aagaaaggacaagcagctctctatggcaaaaggagggggcagaaggaagaggatgagcag
gaggatctcaccaaggacatggaggatcccaccccagtacccaacatagaagaagtggca
cttcccaaaaatgtgaacccaaagaaggacagtgagaacacgcccgtcaaaggaggaacc
gtggcagacctggatgagcaggatgaggagacagtggcaactggaggaaaggaggacgag
gaccccaacaagggtgaccagagccgctccctggacgcgggggaggacaatgtcaccgag
cagaccaaccacatcatcatccccagctacgcctcctggttcgactacaactgcatccac
gtgattgaacgtcgagcgcttcccgaattcttcaacgggaaaaacaagtccaagactcca
gaaatatacctggcctacaggaacttcatgatcgacacgtaccggctgaacccgcaggag
tacctgaccagcactgcctgcaggaggaacctcaccggggacgtctgtgctgtcatgagg
gtccacgccttcctggagcagtgggggctcatcaactaccaggtggaccccgagagccgc
cccatggccatggggccccccccgaccccccacttcaacgtgctggccgacaccccctcg
gggctgatgccgctgcacatccgcaccccgcaggttccagctgcccagcagatgctgagc
ttccctgagaaaaacaaggagaagccaactgacctgcagaactttggccttcgcacagat
atctactccaaaaagactctggccaagagtaaaggtgcaagtgctggcagagaatggaca
gagcaggagacactgctgctgttagaggccctggagatgtacaaggacgactggaacaag
gtgtcggagcacgtgggcagccgcacgcaggacgagtgcatcctgcacttcctgcgcctg
cccatcgaggatccttacctggagaactcggatgcctccctgggccccctggcctaccag
cccgtgcccttcagccagtccggcaaccccgtcatgagcaccgtggccttcctggcctcc
gtggtggatccacgtgtggcctcagctgcagccaaggctgccctcgaggagttctcccgg
gtcagagaggaggtgcccctggagctggtggaggcccacgtgaagaaggtgcaggaagca
gctcgagcctctgggaaggtggatcccacctacggcctggagagcagctgcatcgctggc
acgggccctgaggagcctgagaagatggatggagctgaggaggagaagatggaaacagag
gccgaggggcagccagcagagaaggtggagagcaaagccgagagtgagcctgaggagggg
gagaaggttccggaaggggagagcgagcggaacgtggacaaggagcccgagagcgagggg
gctgcagagcccaagacagaggaaaaggaggcagaggagaacaaggagaacgttgatggc
agcaaggacaaagaggctgaggctgggaagaagaaagtggagcacgagatctcggaagga
aacgtggccacagctgcagctgctgccttggcctctgctgccaccaaagccaagcacctg
gcagctgtggaggagaggaagatcaagtctctggtggcccttctggtggagactcagatg
aagaagctggagataaaacttcgccactttgaggagctggaaaccatcatggaccgggag
aaagaggcactggagcagcagaggcagcagctgctgaccgagaggcagaacttccacatg
gagcagctcaagtacgccgagttgagggctcgccagcaaatggagcagcagcacagccag
aacccccagcagccccaccagcaccccagcgggcctggcatcacccccctgggggcacca
gcacacccagggctgctgccccaccagcagcccccaccctaccccatgatgcaccaccag
atgccacctcctcacccacctcagccag
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integrated database retrieval system
