Geospiza fortis (medium ground-finch): 102041212
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Entry
102041212 CDS
T03755
Symbol
COL4A6
Name
(RefSeq) collagen type IV alpha 6 chain
KO
K06237
collagen type IV alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04382
Cornified envelope formation
gfr04510
Focal adhesion
gfr04512
ECM-receptor interaction
gfr04518
Integrin signaling
gfr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102041212 (COL4A6)
04518 Integrin signaling
102041212 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102041212 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102041212 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102041212 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gfr04147
]
102041212 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
gfr00536
]
102041212 (COL4A6)
Exosome [BR:
gfr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102041212 (COL4A6)
Glycosaminoglycan binding proteins [BR:
gfr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102041212 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102041212
NCBI-ProteinID:
XP_014162020
LinkDB
All DBs
Position
Un
AA seq
1743 aa
AA seq
DB search
MPTWLHLPATSECYSRLQVMAQRQELRHRSTEFFGGEKAGGEIFPPLSWRNSGALLLLLL
WLGAELASAGGKKSYIGPCGGRNCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGL
PGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGPPGLDGCNGTTGS
PGLSGPDGFPGLPGLPGRPGPKGLKGEPVFAQGGLKGMKGENGLPGLDGVPGPKGFPGPV
GPAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMG
FPKGKQGEKGEPGPQGFPGDQGLPGIPGFGGVGEKGEKGVPGLPGGRGLLGLDGSEGIPG
RKGHPGVPGYPGLDGVEGMKGELGDIGPPGPPVIIDREGVVISGAPGDPGSPGIPGPPGD
EGIVGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGIPGPPGRGGLPGL
PGAPGLPGSPRPSFSPGIILSGRAGVPGEPGPRGLPGALGPKGYKGEAGDCACDGGVTRA
GLKGISGPPGPSGSPGVPGAKGIGGDPGSVGAPGLRGPPASAGQQGLPGLKGEKGDPSYA
TVKGARGDRGATAPRGPSGIPGAPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKG
HRGEPGSPGVGYPGPSGVRGPPGDSGMDGFPGQAGLPGPPGITLPCIVPGAYGPPGTPGF
PGLPGPKGNKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGTQGLPGLDGT
DGLPGKMGAPGLVGIKGALGDVFGAESGTVGERGRPGLPGDKGLTGDIGFPGPKGLDGRP
GLLGVKGEQGQPGYSGVPGLRGPPGPGGPFGIKGKPGPLGSAGLAGAPGCQGPPGVKGVA
GDVGPQGPAGMKGFPGLDGAPGSPGERGFIGPPGPFGQDGHPGFSGPKGEKGSSGLLGFP
GMPGLPGVPGVNGFKGAPGTAGGKGSPGVVGLQGQKGDRGDIGPPGLPVLGTSEQALQIK
GDKGEPGLAGLGGFPGPRGDKGMPGSRGQPGLPGPVGSPSKERGPHGDPGFPGPPGQLGL
PGQKGAHGIMGFPGMPGERGSDGTTGALGFPGPIGLPGPKGEQGESLGVPGTAGPKGERG
DPGFPGERGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAGLRGAPGPPGPPG
QPGSVGFPGARGTMGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGE
EGSPGLGRGAAGFPGPKGSAGDVGLPGPMGLPGLPGTPGVSLPSDIRGRPGDAGVPGTDG
SSGFPGRPGPQGPPGPASDQGDTGTPGFPGVLGLRGIKGDVGPTGPVGLPGASGLKGARG
EPGLMGMPGKDGPPGDPGHAGLKGEMGPRGLPGRPGAPGITPQPEEVTAPAGLPGLPGID
GVPGFDGDPGFHGPAGKPGPKGLPGRSGLKGRDGLPGTPGTAGDPGLSGAPGPQGFEGAA
GKPGPPGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKLWDGYSLLYVEGQEKAHNQD
LGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRC
SVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDF
RATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKAGQLRTRVSRCQVCM
KNL
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgcccacatggctccatctccctgccacatccgagtgttactcacggctgcaggtgatg
gctcagcgacaagagctcagacatcgctccacggagttctttgggggagaaaaggcagga
ggggaaatctttcctcctttgtcctggaggaacagcggggcgctgctgctgctgctcctc
tggctgggcgcggagctggcgagtgcgggtggaaagaagtcctacattggaccatgtggg
ggccgcaattgcagtgctggatgcaaatgttttccagagaagggtgcacggggtcgacca
ggaccaattgggcttcaaggaccgataggagcacctggatttactggcccagaaggtttg
cctggagccaaaggtgagagaggagcagtgggccctcctggaccagctggacagaaaggt
gacaagggtccaatgggagttccaggattccagggcatcaacgggatcccaggtcaccct
gggcagtctggacccagaggccctcctggcctcgatggctgcaatggcaccactgggagt
cctggcctttctggacctgatgggtttcctggcctacctggactgcctggtcgtcctggc
ccaaaaggccttaaaggagaacctgtttttgctcaaggcggtcttaaaggaatgaagggt
gaaaatggtcttcctggattggatggagttcctggcccaaaaggttttccaggtccagta
ggtcctgcaggccctataggattaccaggtttgcagggtccagtgggtccccctgggccg
ccaggtccaaaaggtaacatgggattaggctttcaaggagagaaaggagaaaagggtgat
gtggggctgcctgggcctccaggtcccccaccatccactggaattctggaattcatggga
tttccaaaggggaagcaaggagaaaagggagagccaggtcctcaaggattccctggagac
caaggattgcctggcatcccgggctttggaggtgttggagaaaaaggagaaaaaggtgtg
cctggcttaccaggtggcaggggtcttttgggattggatggatctgaaggaattccaggg
agaaagggccacccaggtgttccaggctatccaggactggatggagtagaaggcatgaag
ggtgaattaggtgacatcggtcccccaggccctcctgtcattattgacagggaaggtgta
gtcatttcaggtgccccaggtgaccctggaagcccaggaatacctggtcctcctggagat
gaagggattgttggtttgccaggccttccaggggctccagggtttccaggcctggagaga
gatggaatgggccctggagggtctccaggtattccaggagtgaagggtgaagttggagaa
ccaggaagagcaacaattggaataccaggccctcctggcagaggtggtttaccaggtctg
ccaggggcaccgggattgcctggttcaccacgcccttcattctccccagggataatcctg
agtggaagagctggggtcccaggggagcctgggccaagagggctgccaggagctttgggt
ccaaagggctacaaaggagaggcaggtgattgtgcttgtgatggaggagttacaagagct
ggcctaaaaggcatctcaggcccaccaggtccatcaggaagccctggtgtgcctggtgcc
aagggcattggtggggacccaggctctgtgggagcaccaggactgcgaggccctccggct
tcagctggtcagcaaggacttccaggccttaagggagaaaaaggggatccatcctatgcc
acagtcaaaggtgcccgtggggaccgcggtgcgacagcacccagaggaccttcaggcatc
ccaggagctccgggcagggatggacttccaggcttgccaggcccaccaggccctccaggt
gatggtgggctgggtttcccaggtgaaaagggtctgccaggattacctggctccaagggc
catcgaggagagcctggttctcctggtgttggatacccaggccctagtggagttcgtgga
ccaccaggtgacagtggaatggatgggtttccaggacaagcaggtcttccaggccctcca
ggtatcaccttgccctgcatagttcctggagcttatgggcccccagggactcccggcttt
ccaggactgccaggtcccaaaggcaacaaaggcttttctggcattccaggccaacctggg
ttacatgggtctaaaggacagccaggatctccaggaataataggcttgcaaggggaacct
ggcttccctggacctcgaggagagcaaggcacacaaggacttccaggactggatggaaca
gatggtttgcctgggaaaatgggtgctccaggcttagttggaataaaaggagctcttgga
gatgtatttggtgctgagagtggaactgtgggagagcgtggccgacctggacttccaggt
gataaagggcttacaggtgatattggatttccaggaccaaaagggctggatggaagacca
ggcctcctgggtgttaaaggtgaacagggtcagccaggatattccggtgtccctggactg
cggggtcctcctggccctggaggcccttttggcattaagggaaaaccaggacccttgggg
tcagctggccttgcaggggcaccaggctgtcaaggacctcctggagtcaaaggtgtggct
ggggatgtaggaccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgct
ccaggatctcctggggaaagaggattcatagggccacctgggccctttggtcaagatgga
catccaggtttctctgggccaaaaggtgagaaaggctcttctggcctgcttggtttccct
ggcatgccaggactgcctggtgtccctggagtgaatgggtttaaaggagctcctggcaca
gctggaggaaaaggaagtccaggagttgtgggacttcaaggtcaaaagggtgacagaggt
gatataggtccaccaggtcttcctgttcttgggacttcagaacaggcactgcaaattaaa
ggagacaaaggagagcctggattagctggactgggaggattcccaggacctagaggtgat
aaaggaatgccaggaagccgtggacagcctggtctccctggtccagttgggtcaccaagc
aaagagagaggtcctcatggtgacccaggcttccctggcccacccggacaacttggcctg
ccaggacagaagggtgcacatggtattatgggatttccaggaatgccaggagagaggggt
tcagatggcaccacaggagcacttggattcccaggacctattggccttcctggtccaaag
ggtgaacagggagagtctcttggtgttcctggcactgctggaccaaaaggagagagagga
gacccagggtttccaggagagagggggagagaaggactcaagggtgaaccaggctatcca
ggaaacactggggtgaatggacccaaaggcagcccaggagatcttggccaagaaggacca
gcaggaatacctggaaatgctgggctgagaggagccccaggcccaccaggacccccagga
cagccaggatctgttgggttccctggagctcgtggaacaatgggacctaaaggctttcat
ggatttccaggtttaaatggtctgaatggcttgccaggcacaaaaggctctcctggaaca
ccaggtctgagtgaagctggactgaaaggacctgcaggtctcccaggtccaaagggtgaa
gaaggctctccaggcttgggaagaggagctgcaggattccctggaccaaaaggctcagca
ggagacgtgggtctccctggtcctatgggactgcctggcctgccaggaacaccaggagtt
tctcttccatctgatatacggggcagacctggagatgctggtgttccaggcactgatggc
agttcaggttttccaggtcgtccaggaccacaagggccccctggcccagcttctgaccaa
ggggacacaggcactccaggtttccctggtgttcttggcttgagaggcattaagggtgac
gtgggacccactggtccagttggactccctggagcatctggattgaaaggtgcacgaggt
gagcctggcctaatggggatgccaggtaaagatgggcctccaggggatcctggtcatgct
gggctgaaaggtgaaatgggccctcgaggtctccctggcagaccaggggctccaggaata
accccacagccagaagaagtcacagcccctgcaggattacctggtctgccaggaattgat
ggtgttcctggctttgatggagaccctggattccatggcccagctggaaaaccaggccca
aaaggtttgccaggaagatctggtttgaaaggacgtgatggcttacctggaacccctggc
acagctggggatccaggactttcgggtgccccaggaccacagggatttgaaggtgctgct
gggaagccgggtccccctggcctcccgggcatgccaggccgcagcgtgggtgttggctac
accctggtgaagcacagccagtcagagcagatccccccctgtcccatcggcatgaacaag
ctctgggatggatacagcttgttgtacgtggagggccaggagaaggcccacaaccaggat
ctcggttttgctggctcatgtttgcctcgcttcagcaccatgcctttcatttactgcaac
atcaatgaagtgtgctactacgccagccgaaacgacaagtcctactggctctccaccact
gctcccatccccatgatgcccgtggacagcgtccagatcccacagtacatcagcaggtgc
tctgtgtgtgaagcaccttcccaggctgtggctgtgcacagccaggatatcaccatccca
cagtgtcccctgggctggcgcagcctgtggataggatactccttccttatgcacactgcg
gcgggggcggaaggcggaggccagtccctggtctcacctggctcctgcctggaggatttc
cgagcgactcctttcatcgagtgcaacggcgctcggggcacgtgccactactttgccaac
aagtacagcttctggctgaccacggtggagcaggagcagcagtttgtcagcgctcctccc
tcagagactctcaaggcagggcagcttcggactcgtgtcagccgctgccaggtgtgcatg
aagaacttgtag
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integrated database retrieval system
