Geospiza fortis (medium ground-finch): 102041347
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Entry
102041347 CDS
T03755
Name
(RefSeq) sodium channel protein type 5 subunit alpha-like
KO
K04838
voltage-gated sodium channel type V alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04261
Adrenergic signaling in cardiomyocytes
gfr04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
102041347
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
102041347
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102041347
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102041347
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
102041347
NCBI-ProteinID:
XP_005424395
LinkDB
All DBs
Position
Un
AA seq
1984 aa
AA seq
DB search
MADFLLPPGTNSFHRFTPESLAAIEKRIAEKLARNAKQEYREQLGEEEKPQPQFDLQACK
KLPDIYGTVSPELIGEPLEDIDPFYNDRKTFIVLNKGKTIFRFSATPALYILSPFHPIRR
AAIKILVHSLFSMFIMCTILTNCVFMAQSETPSWNKYVEYTFTGIYTFESLIKILARGFC
MTEFTFLRDPWNWLDFSVIVMAYITEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGA
LIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLRHKCVRDYTMFNFTNGSLYLDGRTWN
NSEEFLSDPVNYFIKNGTEDVLLCGNSTDAGTCPEGYICLKAGENPDHGYTSFDTFGWAF
LSLFRLMTQDYWERLYQQTLRSAGKIYMLFFMLVIFLGSFYLINLILAVVAMAYEEQNQA
TIAETEEKERKFREAMEMLKKEQEALAAKGIDSMSLSSLEMSPKSAKERRNKRKKKKSLG
GDEYGEDQRNPKCDYDDGQRRMTLLGISYGPSANLVKRRTSHGSVFSFRLRGRDTCSETD
FADDEISIAGENESHRGSLLIPRSGRRPSVQSQVSHSSHPTTPNYTQTGKRNSSVDCNGV
VSLIGGGGTGALHPDPTSPAGLLLPPVIMEKPGTGDLTSPSDEASKKQLLMPHRPSVDHS
EEPFQRQRAVSAVSIITSALEELEESHQKCPPCWNHFAVKFLIWDCCPLWLLIKKFVKFV
VMDPFTDLTITLCIVLNTLFMALEHYKMTKEFEHMLYIGNLVFTGIFTAEMIFKVIALDP
YYYFQQGWNIFDSIIVILSLMELGLSSMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIG
NSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYLDNVKKISTTGNLPRWHMNDFFHSFLII
FRILCGEWIETMWDCMEVAGQPLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLSAPD
EDGEMNNLQLAFARINRGLQYAKKAAWNFCCHVLRHPKTTAEKKAMMKLAAQNPGALNNC
VNSHATAELGKDMENHKENRAEDGVNKNGEKHPAITDDDFMTNPDLSICVPIAVGESDIE
EEDEEQSTFTEMEQSHEKLDEISLSEGSTVDLTNPAELLEQIPEFAEELMEPEDCFPEVC
VRFFPCCSVDITKFPGKIWWRLRKTCYRIVEHNWFETFIIFMILLSSGALAFEDIYLEDR
KNIKTMLEYADKVFTYIFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLISLVASTLG
YSEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMG
VNLFAGKFGKCINKTEGDMPLDSKIINNMSDCILYNVSGTFYWTKVKVNFDNVGAGYLAL
LQVATFKGWMDIMYAAVDSRECEEQPEWECNLYMYLYFVIFIIFGSFFTLNLFIGVIIDN
FNQQKKKISGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFDVVSKQAFDV
SIMILICLNMVTMMVETDDQSQEKVNILHKINMLFVAIFTGECIFKMLALRHYYFTNGWN
IFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMM
SLPALFNIGLLLFLVMFIYAIFGMANFAYVKKEYGIDDMFNFQTFANSMLCLFQITTSAG
WDGLLNPILNTGPPYCDPNLPNANGSKGDCGSPAVGILFFVTYIIISFLIVVNMYIAIIL
ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSALSDFADALSEPLRIAKPNK
IKLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPI
TTTLRRKQEEVSAIIIQRAYRRHLFRRSMKQASYLYRHRTLESSSILEDDAPEKEGLIAF
MMNENYGRPIDKSETLSSTSFPPSYDSVTRGTSENLQLKITDVSKSDEAIDCLLSPDKDK
ESIV
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggctgacttcttgttaccaccgggtactaacagcttccaccggttcacgcccgagtcc
ttggctgccatcgagaagcgaattgcagagaagctggccaggaatgccaagcaggaatac
agagagcagctgggcgaggaagagaagcctcagcctcagtttgacttgcaagcttgcaag
aagctgcctgatatctatgggactgtttctccagagctcattggggagcccttggaggac
atcgaccctttctacaatgatcgcaagacatttatagtactgaacaaagggaagacaatc
tttcgatttagtgccactcctgccttgtacatacttagtcctttccatccaatcagaaga
gcagcaattaaaattttggtacattcattgttcagtatgtttattatgtgcactatttta
actaattgtgtgttcatggcacaatcagagactccgtcatggaataaatatgttgagtac
actttcactggcatttacacttttgagtcattgataaaaatattggcaagaggattttgc
atgacagaattcaccttccttcgggatccatggaactggctggatttcagtgttattgtt
atggcatacataactgaatttgtggacctgggcaatgtctcagccttacgaacgttcaga
gtgctgcgggcgctgaaaacaatctcagtcatttcagggctgaagaccattgtaggggca
cttatccagtctgttaagaaacttgctgatgtgatgatcctgaccgttttctgcttgagt
gtctttgccctcataggcctccagctcttcatgggcaacctgagacacaaatgtgtcagg
gattacaccatgtttaacttcaccaatggctccttgtacttggatggtaggacgtggaac
aactcagaggaatttcttagtgatccagtgaactatttcataaaaaatggtacagaagat
gtgttactgtgtggcaacagcactgatgctggcacgtgccctgagggatatatatgtctg
aaggctggggaaaatcctgaccatggttacacaagctttgatacttttggctgggccttt
ctctccttgttccgtcttatgactcaagattactgggaacgtctttaccaacagactctt
agatctgctgggaagatctacatgctttttttcatgctggtcatcttcctgggctcgttt
tacctgatcaacctgattctggctgttgtggccatggcatatgaggagcagaaccaagcc
actattgctgaaacagaggagaaggaaagaaagtttcgggaagccatggagatgttgaag
aaagagcaggaggcactagcagctaaaggaattgattcaatgtcactcagttcattggaa
atgtcacctaaaagtgcaaaagagagaagaaataagaggaagaaaaagaaatctttgggg
ggagatgaatatggggaagaccaaaggaatcccaagtgtgactatgatgatggtcaaagg
aggatgactctccttggcattagttatggtcccagtgcaaacttggtgaagcgcagaacg
agccacggaagcgttttcagtttccgactccgtggcagagacacttgctccgagacagat
tttgccgatgatgagatcagcatcgctggggaaaatgaaagccaccggggctccctctta
attccaagatctgggaggcgtccaagcgtgcaaagtcaagtgagccatagttctcaccct
actactcccaactacacccagacgggcaaaaggaacagctcagtggattgcaatggtgtg
gtttccctgataggaggaggaggcaccggggcactccacccagaccctacttctcctgca
gggttactgctccccccagttattatggaaaaacctgggacaggcgacctgacttccccc
tcggacgaggcaagcaagaaacagcttttaatgccccaccggccctcagtggaccactca
gaggagccctttcagaggcagagggcagtgagtgctgtcagcatcatcaccagtgccctg
gaagagcttgaggaatcacaccagaaatgtcctccctgctggaaccactttgctgttaaa
ttcctcatttgggattgctgcccactttggcttttaatcaagaaatttgtcaagtttgtg
gtcatggacccgtttactgacctcaccatcaccctgtgcattgtgctgaacacgctcttc
atggccctggagcactacaagatgaccaaggagtttgagcacatgctctacataggcaat
ttggtcttcactgggatttttacagcagaaatgatcttcaaagtaattgcccttgacccc
tactactatttccaacagggctggaatatttttgacagcataattgttattctaagcctg
atggaactgggtttgtccagcatgggaaacctctctgttttacgctcctttcgactgctg
agagtcttcaagttggcaaagtcctggccgaccttaaacacgctcattaaaataattgga
aactcagtgggtgccctcggtaacctcactctcgtgctggccatcatcgtcttcatcttt
gccgtggtaggaatgcagctttttgggaaaagctacctggacaatgtgaagaagataagc
accactggcaacctgccacggtggcacatgaatgacttcttccactcgttcctcatcatc
ttccgaattttgtgtggagagtggatcgagaccatgtgggactgcatggaagtagctggg
cagccactgtgccttctcgtcttcttgttggtcatggtgataggaaacctggtggtgctc
aacctgttccttgccttgctgctgagctccttcagcgccgacaacctctcggccccggac
gaggacggcgagatgaacaacctgcagctcgcttttgcccgcatcaacaggggcctgcag
tacgccaaaaaagccgcctggaacttctgctgccacgtcctcaggcaccccaagaccaca
gctgagaagaaggccatgatgaaacttgctgcccagaacccaggagccctcaacaactgc
gtgaacagccacgccaccgccgagctcggcaaagacatggagaaccacaaggagaaccgt
gctgaggatggggtcaataaaaatggagagaaacacccagcaattacagatgatgatttt
atgaccaatcctgacctgtccatttgtgttcccattgctgtgggtgagtcggatatcgag
gaggaggatgaggagcagagcacctttacggaaatggagcagagccatgagaaacttgat
gaaatcagtctttctgaaggcagcacagtggatttgacaaatcctgcagaactgctggag
cagatccccgagtttgctgaggagctgatggagcctgaggattgcttccctgaagtctgt
gtgagattcttcccatgctgttcagtggacatcacaaaatttccaggcaaaatttggtgg
aggctgcgaaagacctgctacagaatcgtggagcacaactggtttgaaacattcatcatc
ttcatgatcctgctgagcagtggagccctggcctttgaagatatttaccttgaagatcga
aaaaacataaaaaccatgctggaatatgctgacaaagtattcacttacatctttgtcctg
gagatgctcctgaagtgggtggcttatggcttcaagaagtatttcaccaatgcctggtgc
tggctggacttcctcattgtagatgtctctttaatcagtctggttgccagcactcttgga
tactctgagatgggtcccatcaaatccctgcggaccctgcgtgccctgcggccactgaga
gccctgtcacgctttgaggggatgagggtggtggtcaatgcccttgtgggagccatcccc
tccatcatgaatgttctgctcgtctgcctcatcttctggctcatcttcagcatcatggga
gtgaacctctttgctgggaagtttgggaagtgcattaataagacagaaggagatatgcct
ttggactctaaaattattaacaacatgagtgactgcatcctttacaacgtgtcgggcacg
ttttactggacaaaagttaaagttaactttgataatgttggtgctgggtacctggctctg
ctgcaagtggccacatttaaaggctggatggatattatgtatgcagcagtggattcaaga
gagtgcgaggagcagcctgaatgggaatgtaatttatacatgtacctttactttgtgatt
ttcatcatcttcggctctttcttcacactgaacctcttcattggtgtcatcattgacaat
tttaaccaacaaaagaaaaagataagtggccaggacatcttcatgacagaagaacagaaa
aaatattataatgcaatgaaaaagctgggatctaagaaacctcaaaagccaatcccaagg
ccactgaacaaataccaaggttttattttcgatgtcgtctcaaaacaagccttcgatgtc
tccatcatgattctcatctgccttaacatggttaccatgatggtggaaacagatgaccaa
agtcaagaaaaagtgaacatcctccacaaaatcaacatgctttttgttgccatcttcact
ggggagtgcatcttcaaaatgctggctctgcgacactactacttcaccaacggctggaac
atttttgactttgtggttgtgattctgtccatcgtaggcaccgtactttctgacatcatc
cagaaatatttcttctctcccacactcttcagagtcattcgtttggctcggattggccgg
atcctgagactcatccggggagccaaaggaattcgaactctcctgtttgccttaatgatg
tcccttcctgctctgttcaacattggcctcttgctgtttctggtcatgttcatttatgcc
atttttggcatggctaactttgcctatgtgaagaaggagtatgggattgatgacatgttc
aacttccaaacctttgctaacagcatgctctgtctcttccaaatcaccacatcagctggc
tgggatggtcttctcaaccccattttaaacactggaccaccatattgtgacccaaacctt
cccaatgcaaatggttcaaagggagactgcgggagccctgctgtagggattttattcttt
gtcacatatatcattatatcatttctcattgttgtaaacatgtatatagccattatttta
gagaacttcagtgtagccactgaggaaagtacagagcctctaagcgaggatgattttgat
atgttctatgaaatctgggagaagtttgaccccgaagccactcagtttattgagtattct
gcactttcagactttgcagacgcgctgtcagaacctttgcgcatagcgaaaccaaacaaa
atcaaactcatagcgatggacctgcccatggtcagcggagacaggatccattgcttggat
attttgtttgcttttacaaaaagggtgctaggagaatctggggagatggatgcccttaaa
atacagatggaagagaagttcatggcagccaacccctccaagatctcctatgagccgata
acaacgacgctcaggcggaaacaagaagaagtctccgccatcatcatccagagggcctac
aggagacatttgttccggcgctccatgaagcaggcatcctacctgtaccggcacagaact
ttggagagcagcagcatcctggaggacgatgcgcccgagaaggagggtctcattgcgttc
atgatgaatgaaaactacggcaggcccatagacaaatcagaaactctgtcctccacctcc
ttccctccgtcctacgacagcgtcacccgaggcacgagtgaaaacctccagctgaagata
acggacgtgagcaaaagcgatgaggctatagattgtcttctctcacccgacaaggataaa
gaatcaattgtttaa
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integrated database retrieval system
