Geospiza fortis (medium ground-finch): 102041575
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Entry
102041575 CDS
T03755
Symbol
TRIP12
Name
(RefSeq) thyroid hormone receptor interactor 12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102041575 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102041575 (TRIP12)
Enzymes [BR:
gfr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
102041575 (TRIP12)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
HECT type E3
102041575 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WWE
HEAT_2
UNC45-central
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
102041575
NCBI-ProteinID:
XP_014163977
LinkDB
All DBs
Position
Un
AA seq
2039 aa
AA seq
DB search
MSNRPSNNPGGSLRRSQRNTAGAQPQDDAVGGRSHLGQAKHKAHSPPESRKSISKTPKVQ
SNTTSEQSKGHFSKRACSSSAVLIPQQEDPERVNTSEKQKTGQVPKKDNSRGVKRSASPD
YRRTNSPSSAKKPKALQHTETSSETNKPHTKSKRRHSDQEQPKSTQLPSTSKAHTRKGGA
AGSSRSQKRKRTENLSCIESGSSVESTGTEEKSAKVSKLASKSVTSAKAGCSTITDSSSS
ASTSSSSSAVASASSTVPQGARVKQGKDQSKARRSRSASSPSPRRSSRDKEPSKTGGSSK
FDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPS
LRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPDNNQDGVNSSAARTDEPPQG
AAASSSVAGAIGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGS
GASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEH
NFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRH
SKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTH
QDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVR
MFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICE
LMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEQINEDTGTA
RAIQRKPNPLASTNTSGHSELKKDDARAQLMKEDPELAKSFIKTLFGVLYEVYSSSAGPA
VRHKCLRAILRIIYFADAELLKDVLKNHAVSSHIASMLSSQDLKIVVGALQMAEILMQKL
PDIFSVYFRREGVMHQVKNLAESEALLTSPPKVCTNGSGTLGTTTTISTGTATAASNAAA
DLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLPKRGPRRPKYSPPRDDDKVDNQAKSPTT
TQSPKSSFLASLNPKTWGRLSTQSNSNNIEPARTAGVSGLARAASKDTISNNREKIKGWI
KEQAHKFVEHYFSSENMDGSNPALNVLQRLCTATEQLNLQVDGGTECLVEIRSIVSESDV
SSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRLKRFLHVFFSSPLPGEEPLGRLEPLENA
PLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTGSSFSLNRGSQALKFFNTHQLKCQLQRH
PDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVREDDEDSDDDGSDEEIDESLAAQ
FLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEEERESTDDESNPLGRAGIWTKT
HTIWYKPVREDEDGSKDCVGGKRGRAQTAPTKTSPRNSKKHDELWHDGVCPSVLNPLEIY
LISTPPENITFEDPSLDVILLLRVLHAISRYWYYLYDNAVCKEIIPTSEFINSKLTAKAN
RQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEIN
QSDSQDSRVAPRLDRKKRTVNRDELLKQAESVMQDLGSSRAMLEIQYENEVGTGLGPTLE
FYALVSQELQRADLGLWRGEEVTLANPKGSQEGTKYIHNLQGLFALPFGRTAKPAHIAKV
KMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFSIDPVVAKSIYHLE
DIVRQKKRLEQDKTQTKESLQYALEALTMNGCSVEDLGLDFTLPGFPNIELKKGGKDTPV
TIHNLEEYLRLVIFWALNEGVARQFDSFRDGFESVFPLSHLQYFYPEELEQLLCGSKTDT
WDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQRLFLQFVTGSPRLPVGGFRSLN
PPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSTIEIMREKLLIAAREGQQSFHLS
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctagtaacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccagccacaagacgacgcagtaggaggaaggtcacatttagggcaggcaaag
cataaggcacatagccctcctgagagtagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgaacagtccaagggacacttttctaaaagagcctgtagttcatct
gctgttttaataccacaacaagaagatccagagagagtcaatacttcagaaaagcaaaaa
acggggcaagtgcctaagaaagacaattctcgaggagttaaacgcagtgctagtccagat
tacaggaggaccaattctcctagctctgctaaaaaacccaaagcacttcaacacactgaa
acttcctcagaaactaacaagccacatactaaatctaagagaagacactcagaccaagag
cagcccaagtctacacaattgccatcaacaagcaaggctcacaccagaaagggtggagct
gctggtagctcccgaagtcagaaaaggaaaaggacagagaatctgtcttgtatagagagt
gggtcatcagttgaatcaactggcactgaagaaaagtcagcaaaagtctccaagctggct
tcaaaatcggtgacctcagccaaagctgggtgtagcaccatcaccgattcttcttcttca
gcttccacctcctcctcctcttctgctgttgcctctgcttcttctactgttcctcagggt
gccagagtgaaacagggaaaggaccagagtaaggctagacgttcccgttctgcatccagc
cccagtccaagaaggagtagcagggacaaagaaccaagtaaaacaggtggctcttcaaag
tttgactgggctgctcgatttagccccaaagtcagtctccctaaaacaaaactgtctcta
ccaggctcttccaagtcggagacatcaaaacctggaccttcaggactacaggctaagcta
gcaagtctaagaaaatccacaaagaagcgcagtgaatcaccacctgctgagctccccagt
ttacggcggagcacacggcaaaagaccacgggctcctgtgctagcaccagtcggcgaggc
tctggcctgggcaaaagaggagcagctgaagctcgccgacaggagaagatggccgatcct
gacaacaaccaggatggagttaactcttcagctgcacggacagatgagcctccccaggga
gctgcagcttctagttctgttgctggagctataggtatgacaacttctggagaaagtgag
tcagatgattctgagatgggaagactacaagctctattagaggctaggggtcttcctcct
cacctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagt
ggagctagttctaaagctcaacagcttttacaaggtctccaagccactgatgaaagtcag
caactacaggcagtgattgagatgtgccagctgttggttatgggaaatgaagaaacatta
ggaggatttccagtcaagagtgttgtaccagctttgataacactgctgcagatggagcac
aactttgacattatgaatcatgcgtgtcgggccttaacatacatgatggaagcccttccc
agatcatctgctgtagtggtagatgcaattcctgtcttcttggaaaagctgcaagttatc
cagtgcattgatgtggcagagcaggcgcttacagccctggagatgttgtcacgcaggcac
agtaaagccattctgcaggcaggtgggttggcagactgtttgctgtatctggaattcttc
agtataaatgcacaaaggaatgcactagctattgctgccaactgctgccagagtataaca
cctgatgagtttcactttgtggcagactctttgccactgctaacacaaaggttaacccat
caggacaaaaagtctgttgaaagcacttgtctgtgttttgcacggctagtggacaacttc
cagcatgaagagaacttgctgcagcaggttgcttccaaggacttgttaacaaatatccag
cagctcttggtcgtgacacctcctatcctgagctcaggaatgttcatcatggtggtgcgc
atgttctccctgatgtgctccaactgccccacacttgcagtccagcttatgaagcaaaat
attgcagaaacgcttcacttcctcctttgtggagcctcaaatgggagttgtcaagaacaa
attgaccttgttccacgaagtcctcaagaactttatgaacttacatctcttatctgtgaa
ctgatgccttgcctgccaaaagaggggatctttgctgttgatactatgctaaagaaagga
aatgcacaaaatacagatggtgcaatatggcaatggcgagatgacaggggtctctggcat
ccctataacaggattgatagtcgaataatagagcaaataaatgaggatactggaacagct
cgtgccattcagcgaaaaccaaaccctttagccagtacaaacactagtggacactcggaa
ttgaagaaggatgatgctcgagcacaattaatgaaagaggacccagaactggcaaaatcc
tttatcaaaacactgtttggtgttctttatgaagtatatagttcttcagctggacctgct
gttagacacaagtgccttagagcaattcttaggataatttattttgctgatgctgaactt
ctgaaggatgtgctgaaaaaccatgctgtttcaagtcatattgcctccatgctgtcgagt
caagaccttaagatagtagttggagccctgcagatggcagagattttaatgcaaaagtta
cctgacatttttagtgtttacttcagaagagaaggggtgatgcaccaagtgaaaaacttg
gcagagtctgaggctttgctaacaagccccccaaaagtatgcaccaatgggtcaggaacg
ctgggaaccactacaaccataagtactgggacagccactgctgccagcaatgcagctgca
gatctgggctctcccagcttgcagcacagccgggaggattccttggatctgagcccacag
ggacgactgagtgatgttctgaagagaaaaagactgccaaaacgagggccaaggagacca
aaatactcccctccaagagatgatgacaaagtagacaatcaagctaaaagccctacaact
acgcagtctcctaaatcatctttcttggcaagtttgaatcctaaaacatggggaagatta
agcacacagtccaacagtaataatattgaaccagcacgaacagcaggagtaagtggtctt
gcaagggctgcttccaaggatactatttccaataacagagaaaaaattaagggctggatc
aaggagcaagcccataaatttgtagaacattattttagttctgaaaacatggatggaagc
aatcctgcactaaatgtattacagagactttgcactgcaactgaacaactcaacctccag
gtggatggtggaacagagtgccttgtagaaatccgtagcattgtctcggaatctgacgtc
tcctcttttgaaatccagcatagtgggtttgttaaacaactgctgctctatttgacatct
aaaagtgaaaaagatgctgttagcagagatatcagattgaaaagatttcttcatgtattt
ttttcttctccacttcctggagaagagccccttggaagattagagccattagaaaacgca
cctttgttggcattagtccataaaatgaacaactgcctcagtcagatggaacagtttcct
gtgaaagtacatgacttccctagtggaaatggaacagggagcagtttttctcttaacaga
ggatcccaagctttaaaattcttcaatacacatcaattaaaatgccaactgcaaagacat
ccagactgtgctaatgtgaaacagtggaaaggtggacctgtgaagattgatcctctggct
ttggtacaagccattgaaagataccttgtagttagaggctatggaagagttagagaagat
gatgaagatagtgatgatgatgggtcagatgaagaaatagatgaatctttggctgctcaa
ttcttaaattcagggaatgtgagacatagattgcagttttacattggagatcacttgctg
ccatacaatatgactgtgtaccaggcagtcaggcagtacagtttgcaagctgaggaagag
agggagtctacagatgatgaaagcaacccactggggagagctgggatttggacaaaaacg
cacaccatttggtacaaacctgtgcgagaggatgaagatggtagtaaggactgtgtcggg
ggtaaaagaggaagagcacaaactgctcccacaaaaacctcccctaggaattctaaaaaa
catgatgaattgtggcatgatggtgtatgcccttcggtgttaaatccactggaaatttac
ctcatatctactccacctgaaaatataacatttgaagacccctcattagatgttattctt
cttttgagagttttacatgctatcagtcgatactggtattacttgtatgataatgcagtc
tgcaaggagataattccaacctcagagtttatcaacagtaaactgacagcaaaagcaaac
aggcagcttcaggatcctttggtaattatgacaggaaacatcccgacttggctgacagaa
cttggaaaaacatgcccgtttttctttccatttgacacccgccaaatgctgttttatgtg
acggcctttgatcgtgatcgagccatgcaaaggctgctggacactaacccagaaatcaat
cagtccgattctcaggatagcagagtggcaccaaggctggacagaaaaaaacgcactgtg
aacagagatgagctgttgaaacaggcagaatctgtgatgcaagatctaggcagttcaaga
gccatgttggaaatccagtatgagaatgaagttggcacaggcctaggccctacactagag
ttctatgcacttgtatctcaggaactacagagagcagacttgggcctttggaggggagaa
gaagtgactttagccaatccaaaaggaagccaggaaggtaccaagtatattcataacctt
caaggcctttttgcacttccttttggtagaacagccaagccagctcacattgcaaaagtt
aaaatgaagttccgctttctgggaaaactaatggccaaggcaatcatggacttcagactg
gtggatcttccccttggacttcctttctataagtggatgctacgacaggaaacttccttg
acatcgcatgacttgttcagtattgatccagtagtagccaaatccatatatcaccttgaa
gatattgtaagacaaaagaaaagacttgaacaggataaaactcagaccaaagaaagtcta
cagtatgcattggaggctctgactatgaatggctgctcagtggaagatctagggctggac
ttcacactccctgggtttcccaacatagagctgaaaaaggggggaaaagatacaccggtc
accatccacaatttagaggagtatctcagattggttatattctgggcactaaatgaaggt
gttgccagacagttcgactccttcagagatggatttgagtcggtgttcccccttagtcat
cttcagtacttctatcctgaggagttggagcagctcttgtgtggcagcaagacagacact
tgggatgcaaagactttaatggaatgttgcaggcctgatcacggttatacgcacgacagt
cgagcagtgaagtatctctttgaaattctcagtagttttgatagtgagcagcaaagactg
tttcttcagtttgtgacaggcagccccagactgcctgtaggaggttttcggagtttgaat
cctcccctgacgattgtacggaagacatttgagtccacagagaatcctgatgatttctta
ccctcagtaatgacttgtgtgaactatctcaaattgccggactattcaaccattgagata
atgcgtgaaaaactcttgatagctgcaagagaagggcagcagtcattccatctttcctga
DBGET
integrated database retrieval system
