Geospiza fortis (medium ground-finch): 102041885
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Entry
102041885 CDS
T03755
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102041885 (SCN1A)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102041885 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
FraC
Lustrin_cystein
New_glue
Motif
Other DBs
NCBI-GeneID:
102041885
NCBI-ProteinID:
XP_005415884
LinkDB
All DBs
Position
Un
AA seq
2013 aa
AA seq
DB search
MEQSVLVPPGPDSFQFFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIG
ENGTLLNSTVAPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPSA
GGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTEPEMRKRISGSFHVSMDFLEDPALGER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTEEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKSYKECVCKISSDCVLPRWHMQDFFHPFLIVFRVLCGEW
IETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARMQKGIDYVKRKVREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSEEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPI
LNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVAT
EESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAMD
LPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKRK
QEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEKT
DITASTAVCPPSYDRVIRPVKEKHEKEDKDGQK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaattcttcactagagag
tctcttgcagctattgaacagcgcattgctgcagaaaaagccaagaaccccaaacaagat
cgcaaagatgatgatgaaaatgggccaaaaccaaacagtgacttggaggcaggaaaaaca
ctcccctttatatatggtgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatcttc
cgattcagtgccacctctgccctgtacattttaacacccttcaaccctcttagaaaaata
gctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtatact
ttcactggcatttacacatttgagtcactaataaaaatcattgcaaggggcttttgctta
gaagattttacttttcttcgagatccatggaactggcttgatttcactgtcattaccttt
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagctttgaaaacaatatcagtcattccaggcctgaagacaattgtaggagccctg
attcagtctgtgaagaagctctcagatgtgatgatcctgactgtattttgtctgagtgtg
tttgcactgatagggctgcagctgttcatgggcaacctgaggaataaatgcctgcagtgg
cctccagaaaattttactttggaaacaaacattacttcccagctaaacagcaccataggt
gaaaatggcacattgcttaattcaacagtggctccgtttgactggaaggggtacattgaa
gatgaaagtcatttttattttctggaagggcaaaatgatgctctgctttgtggaaatagc
tctgatgctgggcagtgcccagaaggatatacttgcgtgaaagctggcagaaaccccaat
tatggctacacaagttttgacaccttcagctgggctttcttgtcactgtttcggctaatg
actcaggacttctgggaaaacctttatcaattgactcttcgtgctgctgggaagacatac
atgatattttttgttctggtgatttttctgggctctttctatctgataaacctgatcctg
gctgtggttgccatggcctatgaagaacagaaccaagcaaccctggaagaagcagagcag
aaggaggcagaatttcaacagatgctggaacaactgaagaagcaacaagaagcagcgcag
gcagcagcagtggcagcagcagcagtaacagcatctgcagagtccagggagcccagtgcc
ggaggagaagcaggagggctctcagaaagctcctcagatgcatcaaaattgagctcaaag
agtgcaaaagagaggagaaatagaaggaaaaaaaggaaacagaaagaacagtctggagga
gaggaaaaagatgaagatgaatttcacaagtctgaatcagaagacagcatcagaaggaaa
ggtttccgactgtctattgaaggcaatagactgacatatgaaaagaagtattcttctcca
catcagtctttgctgagcattcgtggctccctgttttccccaaggcgcaacagcagaaca
agtcttttcagcttcagaggtcgagcaaaggatgtagggtcagaaaacgactttgctgat
gatgagcacagcacttttgaagacaacgacagcagaagagattctctctttgtgccgcgc
aggcacggagaacggcgcaacagcaacatcagccaggccagtaggtcatccaggatgctg
gcagtgtttccagtgaatgggaagatgcacagcactgtggattgcaatggggtggtttcc
ctggttggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacgacagaaccagaaatgaggaagaga
atatcaggttcttttcacgtttctatggacttcctggaagatccagctttaggggaaaga
gccatgagtattgctagcatcctcacaaacactgtggaagagcttgaagaatcgagacag
aaatgcccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagtcct
cattggctaaaagttaagcatattgtcaacttagtggtaatggacccatttgttgacctg
gcaattacaatttgcattgttttaaatacactctttatggctatggaacattatccaatg
accgaagaattcaataatgtactttcagttggaaatctggtcttcactggaatcttcaca
gcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggctgg
aatatttttgatggctttattgtaacccttagcttggttgaacttggtcttgcagatgtg
gaaggactatctgttcttcggtcattcagattgttacgagttttcaaattggcaaaatcc
tggccaacactaaatatgttgataaaaatcattggtaattctgtgggagctctggggaat
ctgaccctggtgctggccatcattgtgttcattttcgctgtggttgggatgcagctcttt
gggaagagctacaaggaatgtgtctgcaagatctccagtgactgtgtgctccctcgctgg
cacatgcaagatttcttccaccctttcctgattgtattccgagtgctgtgtggagaatgg
atagaaaccatgtgggactgcatggaggttgctggccaagccatgtgccttacagtcttc
atgatggtcatggtgattggaaacctggtggtactgaacctatttttggccttgctcttg
agctcatttagtgcagacaaccttgctgtgacagacgacgataatgaaatgaacaatctc
cagattgctgtggcaagaatgcagaaaggcatagattatgtgaagagaaaagtgcgtgaa
ttcatccaaaaagcctttgttaaaaaacagaaagctttagatgaaatcaaaccacttgaa
gacttaaacaacaaaaatagctgtatttctaaccatacaactgtggaactaagcaaggac
catgactatattaaagatgcaaatggaaccaccagtggtataggcacaggcagcagtgtg
gaaaaatacataattgatgagagcgattacatgtcattcataaacaacccaagcctcact
gtgacggtgcccattgctgtgggtgaatctgactttgaaaatctaaacacagaagaattt
agtagtgaatcagacctggaagaaagcaaagagaagttaaattcatccagttcctctgaa
ggcagcacagttgatattggacttcctgcagaagaacaaccagaagctgaacctgaagaa
gcccaggagccagaggcctgcttcacagaaggctgtgtaagaaggttcaagtgctgtcaa
gtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttcagg
attgttgaacacaactggtttgagactttcattgtctttatgatcctcctcagtagtgga
gctctggcttttgaagacatatatattgaacaacgtaaaactatcaagaccatgctggaa
tatgctgacaaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtggcc
tatggctaccaaacgtattttactaatgcctggtgctggctggacttcctgattgtcgat
gtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcacgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtatgcagctattgactcaagagatgtgttagatcaacccaaatat
gaagacaacttgtatatgtacttgtattttgtcatctttataattttcgggtcttttttc
accctgaatttgttcattggtgttattattgacaacttcaatcagcaaaaaaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
ctgggatccaaaaaaccacaaaaacctataccaagaccagggaataaattccaaggaatg
gtctttgattttgtgacacagcaagtatttgacatcagcatcatgattcttatttgtctt
aacatggttaccatgatggtagaaactgatgaccagagcgaagaaatggaaaatatttta
tactggataaacctcgtgttcattgtccttttcactggagaatgtgttctgaaattaatt
tcacttcgccattactacttcactataggctggaacatttttgattttgtggttgtcatt
ctctctatagtaggaatgtttttggctgagatgattgagaagtactttgtgtctcccaca
ctattcagagtcatccggcttgccaggatcggtcgaatcctgcgcctcattaaaggcgct
aagggaatccgcactctgctttttgctttgatgatgtctcttcctgctttgttcaacatt
gggctgctgctcttcctggtcatgttcatctatgccatatttggcatgtccaactttgcc
tacgtcaagagggaagctgggattgatgacatgttcaactttgaaacgtttggcaacagc
atgatctgcctgttccagatcaccacatccgctggctgggacggtttgcttgccccaatt
ctcaacagtggagagccagactgtgaccccaacaaggctcatccaggaagctctgtgaaa
ggtgactgtggcaacccttctgttgggattttcttctttgtcagctacattatcatatcc
tttctggtagtggtgaacatgtacattgctgtgattttggagaacttcggtgttgctact
gaagaaagcgctgaacccttgagcgaggatgactttgagatgttctatgaagtctgggag
aagtttgaccccgatgcaacacaattcatggaatttgagaaattgtctgattttgcagca
gcacttgagcctcctcttcatctacccaaacctaacaaagtccagcttattgcaatggat
ctgcccatggtgagtggtgacagaattcactgccttgacatcttgtttgctttcacaaag
cgtgtcttgggggaaagtggggagatggacgccctcagaatacagatggaagatcggttt
atggcatccaatccttctaaagcttcctatgaaccaattacgactacattgaaacgaaaa
caggaggaagtgtctgctgttataattcagcgtgcttacagacgtcacctcttaaaacga
acagtaaaacaagcttcctttatctataacaaaaataaaactgaaggtggggctggtcag
ggtatgaaagatgaaatccttattgacaagttaaatgaaaactcatttacagagaaaaca
gacataaccgcatcaacagcagtttgtccgccttcttatgatcgtgtaataaggccagtc
aaagaaaagcatgaaaaggaagataaagatggtcagaagtaa
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