Geospiza fortis (medium ground-finch): 102042085
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Entry
102042085 CDS
T03755
Symbol
CHD9
Name
(RefSeq) chromodomain helicase DNA binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102042085 (CHD9)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102042085 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
102042085
NCBI-ProteinID:
XP_014164709
UniProt:
A0A6I9ZAM4
LinkDB
All DBs
Position
Un
AA seq
2847 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNSTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTTLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPSSELVRAPSQTQIHPWHSSVSNQHLQGRSRATLQGQP
PSKKTDGSGSYTKLQNTQVRGMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNIP
RVMSPENFPSVSAEGKEEKKGRKVKSKPKDKETKKPKTGSSSKIKEKTKIGKLIITLGKK
QKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYSEEGEGKQSEEEAAKVAVK
MKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPXXXXXXXLKTEEQVQKLQAILKPMMLRRLKEDVEKKLA
PKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIK
GAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL
DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD
TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVL
QSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQILQRRTKTIT
IESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSLVIDTPRIR
KQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYGRTECFRVEKNLLVYGWGRWR
EILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDGQTRELQNH
LGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHHCNKVLLRV
RMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHCXVWDADADKSLLIGVFKHGYEKY
NTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPALFKDDIEDDVSSP
GDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQIQPAFPVQTSMM
QLPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGRFDWTKFRAMARL
HKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNLFIQPITEERASRTLYRIELLRKVR
EQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTDYHILRDPELSFM
SAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFEDTKAKNENLKEE
PQSSEEESMSTEETQTILKSEPLSPKNGTSIQMTDHRPSVKAETDRRMVAARTEPLTPNP
ASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSA
SSSSSSSSSSSSSSSSSSSEESDSDEEEAQKREGTPHIKAYDEESVASLSTTQDETQDSF
QMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDSTTVAS
FYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHVREKEFTVKINDEGG
LKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFPKSLPKSGTSSHLT
ASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINSCQVAAGINPALTY
TQSQGVLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVEDSGACIPRMQLHD
GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENPEYG
VAPEWGEVVKQSGFLPEGMFERILTGPVVREEVSRRGRRPKSEIAKATAAAAAASAHSVS
TAGLMGMPAGLAAAAGEAKNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTESASEEKKGND
AKETDAKKERTEDQNTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPG
LNLHIPALSQSNIFDVQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDE
GSEKADASSGSDSTSSSSEDSDSSDED
NT seq
8544 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcagttc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggccgat
ggtagtcctatgtggggtcatcaaactgccacgactgtttcgaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcag
agcaggaacagcacggggcaggatgctctgagtcagccaaaagacttcatggaagttaac
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcgatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaatagtcaacaattttcatctccgtattcctactctaataatcacatttctcctacc
agccttcttcagcctacaacagctctttctactagccagcagacacactctatctctgac
ttcactggaagtgatgcctttacatctcaaacagggaccaagcaagaaacaaccgagcac
atgttgaatcctaacacaactttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcgaaactctctcctgtgaatattaattttccagcttct
actggttctgcttctcagataagccatttcaccgaccctattgaaagcaacggttttaca
tctttagatgacaatttacttcatcaagtggagactcacagtgaaccattcacaggactt
gacccggatgacctcttacaggaagatcttctgccacagtttgatgactctgcctttgtt
caggatagcacaagccatgttttagagcatgacctggaacaccacataaccccacagcaa
gtgacaccgtcatccgaactcgttcgggcaccgtctcaaactcagatccatccttggcat
tcttcagtttctaatcagcacctgcagggcagaagtcgtgcaaccttacaaggacagcct
ccttccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtgagg
ggaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaaggca
aatcgcattatatccgaagcaattgcaaaggcaaaagagagaggagagagaaacattcca
cgagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaagaag
ggtagaaaagttaaatccaaaccaaaggataaggagactaaaaagccgaaaactggttcc
tcatccaaaattaaagagaaaacaaaaattggaaagctgatcatcacactgggcaaaaag
cagaaaaggaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacagcgg
ccactgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaaaag
tactctgaagaaggagaagggaaacaatcagaagaagaagcagctaaagttgctgttaaa
atgaagaagaattctgcccctttacctgctgagcagcctttacaattatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaagaaa
gaaatatctgcagggatgacagtagacacagaagagttttttgtaaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttctttgcagatatg
gaagaggaaccttttaatcctgactatgttgaagtagaccgagtattagaagtgtctctt
tgtgaagacaaagacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcctggaagaagatagaacagtccagagaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctcttcaactggtacaataggcgaaattgcatatta
gcagatgaaatgggccttggcaaaaccattcagtccattacattcctgtatgaaatcctc
ctgacgggtataagaggccctttcctgatcatagctccgctctccaccataacaaactgg
gagcgggagttccgcacgtggactgacctgaacgtcgtggtgtaccacgggagcatgatc
agcaggcagatgattcagcagtatgagatgtacttcagggactcccagggccgtattgtc
cgaggtacctacaggttccaggccattatcacaacgtttgaaatgatccttggtggctgt
ccagaattaaatgcaattgagtggcgctgtgttattattgatgaagctcacagactgaag
aacaaaaactgcaaacttttggaaggactaaaattaatgaaccttgagcataaagtgctg
ttaacaggtaccccactgcagaacacagtagaagaattatttagcctccttcattttctg
gaaccannttnnnnnnnnnnnnnnnnncttaaaacagaggaacaggttcagaaactacaa
gctatcctgaaacccatgatgctcaggagattaaaagaagatgtagaaaaaaagctggct
cctaaggaggaaactataatagaagtagagctaactaatattcagaagaaatattaccga
gcgattttggagaaaaattttgccttcttatccaaaggagcagggcaggcgaatgtaccc
aacctggttaacactatgatggaactcagaaagtgttgtaatcacccttatctcatcaaa
ggtgctgaagagaagatccttggagagtttaaggaaacatatagtccaagtgctcctgac
ttccacctgcaagcaatgatccagtctgctggtaaattggttcttattgataagctgctt
ccaaaaatgaaagcaggaggccacaaggtccttatcttctctcaaatggtgcgctgcctt
gatattttggaggattaccttatccataaaaggtacctgtacgagcgcatcgacgggcgc
gtgcggggcaacctccggcaggcggccatcgaccgcttcagcaaacccgactcggatcgc
ttcgtcttcctgctctgcaccagggctgggggcctgggcatcaacctgactgctgcagat
acctgcatcatttttgattctgactggaacccccaaaatgacctgcaggctcaagcccga
tgccacaggattggtcagaacaaagcagtgaaggtctacaggctgatcacacgtaattcc
tatgagagagagatgtttgacagagcaagtctgaaactgggactggataaggctgtcttg
cagagtatgagtggaagagaaaacagtgttggtggtatccaacaactctccaaaaaagaa
atagaggacttgcttcgaagaggtgcctatggtgccataatggatgaggaggatgaaggc
tccaagttctgtgaggaggacattgaccagatcctgcaacgtcggaccaaaaccatcacg
atcgagtctgagggaaggggctccacgtttgccaaggctagtttcgttgcatctggaaac
aggactgatatttcactagatgatcctaacttctggcagaaatgggccaaaaaagcagaa
attgatattgatgctatcagtggtagaaacagccttgtcattgataccccaagaatcagg
aagcaaacacggcccttcagtgctaccaaggatgagctggcagagctgtcagaggtggag
agtgagggggatgagaagcccaagctgcgccggccgtgcgaccgctccaatggctatgga
aggacagagtgcttccgtgtggagaagaacttgctggtctatgggtggggccgatggaga
gaaattctgtcccacggccgcttcaagaggcagctgaacgagcaggatgtggagatcatt
tgcagagccctgttagcctattgccttgttcactacagaggggatgagaaaataaagagt
tttatatgggatctcatcaccccaacagaggatgggcaaacacgagagttacagaaccac
ctcggcttatcagcccctgtgcctagaggaagaaaaggaaaaaaagtgaagacccaggct
agcacttttgatatacacaaagcagaatggcttcgaaaatacaatccagagcatctgctg
caagatgaaggctacaaaaagcacataaaacaccattgcaacaaagtcttacttcgagta
agaatgctgtattacttaaagcaagaagtcattggtaatgaattccaaaaggtctttgat
ggaactgatgccagtgaaattgatgtttgggttcctgagccagaccattgttgagtgtgg
gatgcagatgcagataaatctcttctaattggagtttttaaacatggttatgaaaaatac
aacactatcagagcagacccagctctttgcttcttggaaagagttggaaaaccagatgag
aaagcagttgctgctgaacagagagcaaatgattatatggatggggatgtagaagatcca
gagtataaaccagcaccagcactgtttaaagatgacatagaggatgatgtttcatctcca
ggtgatctcgtaatagcagatggagatggacaaatgatggaaggggacaaaatctactgg
cccactcagtctgccttaacaacgcggctgcgccgcctgatcaccgcttatcaacgcacg
agcaaaaacaggcaggcccagcagatccagccagcattcccagtacaaaccagtatgatg
cagttgccatatgaagaagctgcattaaatccaaagatggctgctaagattgaaagacag
caaagatggacaagaagagaagaagctgacttttacagagttgtgtccacatttggagtg
gtgtttgaccctgagaggggacggtttgactggaccaagtttcgagcgatggctcggctg
cacaagaaaactgatgagagcttggagaagtacctgtatgcatttatgtcaatgtgcagg
agggtctgtcgcctcccctcaaaagaagaactcgtggacccaaaccttttcatccagccc
atcaccgaggaacgcgcttcccggactttgtaccgcatcgagctcctgcgcaaagtgcgg
gaacaggccctcaggcacccccagctctttgagaggctaaagctgtgccagccaaaccct
gacctgcctgtctggtgggagtgtgggactcacgacagagatctgcttattggagctgct
aagcacggagtcagcaggacagattatcatattcttcgtgatcctgaactctcatttatg
tctgcccagaggaactataatcaaaacaaagtggctctctcaaggacttctactccactc
ttgcaccagtaccagatggcattatctgcttctcctcttacacctcagtcaagactgtca
gatgctaaagtgaacgcttttgaggacacaaaagctaaaaatgaaaatctgaaagaggag
cctcagtcttctgaagaggaatctatgtctacagaggagacacagacaatactgaaatct
gaacctttgagtcccaaaaatggcacctcaatacaaatgacagaccacagacctagcgtg
aaggctgagacagacagacgcatggtggcagcaaggacagagcctctaacgccaaaccca
gcttccaaaaaacagagagtcagcaaaagggggtctgactctagctctgactcagactct
gactcagatagatcatcctgttcttccaggtcatcatcttcatcctcttcgtcttcctca
tcttgttcccactctcgatctggctctagctcttcatcatcctcatcttgttcttcagca
tcttcatcgtcctcttcatcgtcctcatcgtcatcgtcgtcatcatcatcatcgtctgaa
gagagtgatagtgatgaagaggaggcacaaaaacgtgaaggaactccacatataaaagcc
tatgatgaagagagtgtggcctctctgagcaccacacaagatgagacacaggacagtttc
cagatgaacaatgggaccccaaattctggttatctcctacaaggtggatacatgttggct
gcatcctactggcccaaggatcgagttatgattaaccgactggacagcatttgtcagaca
gtgctgaagggtaaatggccttcagcccgaaggagctacgacagcaccaccgtggcatcg
ttctataccaccaagctgctggacagctcaggggcagctgcagagtacagtgagcccagt
gcacccacaccccctctggcagctgtaaaagaagaatatgaccaatcaccccagctgtca
aaggtgaagaagcatgtacgagaaaaggagtttacagtgaaaatcaatgacgaaggtggt
ttgaaattgacttttcagaagcagggactgtctcagaaaaggccgtttgaaagcgaggag
ggtgcattgggtcagcagcagtatctggctcggctccgtgaactccagaatgcttcagaa
accagccttgtcaacttcccaaaatcacttcccaaatcaggtacttccagtcacttaaca
gccagtgccaatggagtcatcgttgacagtcagcctgtggtcaaaaagagacgaggaaga
aggaagaatgtggagggggttgatgtcctctttatgaatagaaataaacagcctaaccat
gttaatccaggtattaactcctgccaggtggctgcaggaataaacccagcactcacttac
acacagtcccaaggcgtgctcgatgcagagagcccagttcctgttattaacctaaaagat
ggaacaaggcttgcaggtgatgatgcccctaaaagaaaagatttagaaaggtggcttaaa
gaacatcctggatatgttgaagattcaggagcttgtattcctaggatgcagctgcacgat
gggaggcccaaacaaaaaagacaccgttgtcgaaaccccaataaactggatgttaacagt
ttaactggtgaagaacgtgttcagctcataaatagaagaaatgcaagaaaggttgggggt
gcatttgctccccctctgaaggatttgtgcagattcttgaaagaaaatccagagtatgga
gtggctcctgagtggggagaagtggtaaaacagtctggcttcctccccgaggggatgttc
gagcgcatcctgacgggcccggtggtgcgggaggaggtgagccgcagggggaggcgcccc
aagagcgagatcgccaaggccacggcggccgcggccgccgcctcggcgcacagcgtgtcc
acggcgggactgatgggaatgccggccggcctcgctgctgccgcgggagaggccaagaac
gtggctgccatgttccccatgctgctgtcggggatggccgggctgccaaacctgctgggc
atgggagggctcctgacaaagtccacggaatccgcttcggaggagaaaaagggaaatgat
gcgaaggagacggatgcaaagaaggaaaggacagaagaccaaaacacggatactggtggt
gaaaactctgtttccagttctccttcgacatcctctgccgccgcagctgccaatcctctc
tctcttaaccctttacttttgtccaacatactttacccagggatgcttctcactccaggc
cttaatcttcatatcccagctttgtctcagtctaatatttttgatgtacagaacagtgaa
agcaatgacacgggctcagccaagcccacagaagaaaaggaggaaaattctagggttaga
gatcaggaagacaaagggggaacagagccaagctctcacaatgaaaacagcacagatgag
ggttcagagaaagcagatgcttcatctggatctgacagtacatcgtcttcatctgaggat
tcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
