Geospiza fortis (medium ground-finch): 102042212
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Entry
102042212 CDS
T03755
Symbol
ATG16L1
Name
(RefSeq) autophagy related 16 like 1
KO
K17890
autophagy-related protein 16-1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04136
Autophagy - other
gfr04140
Autophagy - animal
gfr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102042212 (ATG16L1)
04136 Autophagy - other
102042212 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
102042212 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102042212 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
gfr03029
]
102042212 (ATG16L1)
Membrane trafficking [BR:
gfr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
102042212 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
102042212 (ATG16L1)
Mitochondrial biogenesis [BR:
gfr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
102042212 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
ATG16
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
eIF2A
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Ge1_WD40
CCDC93_CC
Beta-prop_SPT8
ZapB
INO80F
Fez1
WD40_like
HTH_6
Peptidase_M15_4
Lipoprotein_6
FUSC
AP5B1_middle
PALB2_WD40
HEF_HK
WH_CYT4
KASH_CCD
DUF2332
PUMA_CC
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
102042212
NCBI-ProteinID:
XP_005430271
UniProt:
A0A6I9HUA2
LinkDB
All DBs
Position
Un
AA seq
545 aa
AA seq
DB search
MQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDK
EMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRK
TTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDIEV
LADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGRRSLSSFPAPQDNAEPHP
GASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGSL
SGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNAR
IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIV
KELELFGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVKQTFSAQGFKCGSDWTRVVF
SPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAVTWSPSGAHVVSVDKGNKAV
LWAEF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcagacatgagatcagccccggacatgatagcacatggaacgacgctcagctg
caggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcacaagaaa
cgtggcgagctggcccagtctgtaattgatttaaacaaccaaatgcagcagaaggacaaa
gagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaactggaa
acagagtgccaggaattgcgtagcaaactgcaagatcttgagcgggctaatcagacactg
aaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactaaggaaa
actactgaggacaaccaggagctggtctcacgttggatggcagagaaagcgcaagaagcc
aatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctgcagaag
gagctggcagaagctgccaaagaacccttgcctgttgaaccggatgatgacatcgaagtg
ctcgcagatgaaacctctgacacagctgaggaaacctctccagtgcgagctgtcagccgg
acgtccagtaagcgactctcccagccagctggaggccttctggactctatcagtaatatc
tttgggaggcgttctctgtcctcgttccctgccccccaggataatgcagagccacatcca
ggtgccagtaaagaagtgagagtgcccactactgccatttgtgtctttgatgcacatgat
ggggaggtgaatgcggtgcagttcagccctggctcccggttactagcaacaggaggcatg
gaccggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctc
tctggcagtaacgctgggattacaagcatagaatttgatagtgctggttcttacctctta
gctgcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcac
accctcacaggtcacagtggtaaagttctgtcagccaagttcctgctggacaatgcacgt
attgtttcgggaagtcatgaccggaccctcaagctctgggatctccgcagcaaagtttgt
ataaaaacagtatttgcaggatctagctgcaatgacatcgtgtgtactgagcagtgtgta
atgagtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagta
aaagaactggagttgtttggaagaatcacagctctggacctgaaccccgagcgaacagag
cttctgacctgttcccgtgatgatctgctcaagatcattgacctgcgggtcagtgctgtc
aaacagaccttcagtgcccaaggattcaaatgcggctctgactggacaagagttgtgttc
agccctgatggtaactatgtggctgctggctcagctgatggggccctctacatttggaat
gtgcttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgca
gtcacgtggtcaccatcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtg
ctgtgggctgagttctga
DBGET
integrated database retrieval system
