Geospiza fortis (medium ground-finch): 102042455
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Entry
102042455 CDS
T03755
Symbol
NEDD4
Name
(RefSeq) neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04120
Ubiquitin mediated proteolysis
gfr04144
Endocytosis
gfr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102042455 (NEDD4)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102042455 (NEDD4)
09144 Cellular community - eukaryotes
04530 Tight junction
102042455 (NEDD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102042455 (NEDD4)
04121 Ubiquitin system [BR:
gfr04121
]
102042455 (NEDD4)
03029 Mitochondrial biogenesis [BR:
gfr03029
]
102042455 (NEDD4)
Enzymes [BR:
gfr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
102042455 (NEDD4)
Membrane trafficking [BR:
gfr04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
102042455 (NEDD4)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
HECT type E3
102042455 (NEDD4)
Mitochondrial biogenesis [BR:
gfr03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
102042455 (NEDD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
102042455
NCBI-ProteinID:
XP_005419722
LinkDB
All DBs
Position
Un
AA seq
1235 aa
AA seq
DB search
MARRLRLHFATQRSNTDPLSETSEDFLDRNNCMYFKKSQSSAPSFTQVKLIPRQAAYAPV
VQQVINPEKSTTISSLQIKKSSSLHISLQSRKQSGCSRFGDAVAAGEDPSFIGIGSEGSC
GAGAVSDHRSNDSFLSSAALGRGSLSSIAASDSGSFSSAGSDYGSCASTTSDGGSYTNSV
ISDSGSGTLWTSDSTFCSSVAQGDSSYRSTGNKCNPSRSNSSQETLYRSNTTFDQDALSV
RKKTKIPLRRCSSLVIFPRSPSSTPPASPVSSGQLPHRGTYQTSHKLIISPSELAQNEDP
TISKGFLSTAVNGLRLSKTVCSSGEVRDIRPLYLNASLQDKSQILSGSQQATCEVPDGFP
CVSVHLTQRAFASSSEMVNGSCSPELNLNSGTKYPHLKLERSTSACLPSKTDSEYQININ
ELGRPNAQMSKTPHIFQRSVSLEGSRQKVSCCLSSLKYKCHSARTSQLHIQFKAGNEGKT
TGVRKRCGTSKREMSSTLWRPQKPGWIILDQPEAAWHPQQXXXXPPVPSGWEERQDILGR
TYYVNHEFRRTQWKRPTAQDSVAVADLGSVQLEAQHVFTHRRQISEDTESTDNRDSPESW
EIITEDEATMYSNQNVQIPLSQSSCDIQSHLAEELSNRLTTSGSPATGQSTACTNHSSRR
GSLQTYRLEEQPAHPVLLPTSSGLPPGWEERQDEKGRSYYIDHNSRTTTWIKPVVQIAAE
TSQASAAQSISVARQPQATSSDSSQQSSQQQPEMEQGFLPKGWEVRHAPNGRPFFIDHNT
KTTTWEDPRLKISAHPRRKTSLDPVDLGPLPPGWEERTHTDGRIFFINHNTKRTQWEDPR
LQNVAITGPAVPYSRDYKRKYEFFRKKLKKQSDIPNRFEMKIHRTTILEDSYRRIIAVKR
ADFLKARLWIEFDGEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSG
LCNEDHLSYFKFIGRVAGMAVYHGKLLDAFFIRPFYKMMLQKPITLHDMESVDSEYYNSL
RWILENDPTELDLRFIVDEELFGQTHQHELKSGGSEIVVTNKNKRDYIHLVIQWRFVSRV
QKQMTAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVADWKLHTKYKNGYNINHQVI
QWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTVEQWGTPEKLPRAH
TCFNRLDLPPYDSFEDLWDKLLLAIENTQGFDGVD
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacggttaagattgcattttgctacccaaagaagcaacacagacccattatca
gaaacctctgaagattttttggataggaataattgtatgtacttcaaaaaatcgcagagt
tctgcacctagctttacacaagtgaaactaattcctagacaagctgcttatgcacctgta
gtgcaacaagtaattaatccagagaaaagcacaactatttcttcactgcaaataaaaaag
agcagttcactgcacatttccttgcagtctaggaagcagagtggatgttctaggtttggt
gatgccgtggctgctggtgaagacccttcattcattggtattggtagcgaagggagctgt
ggtgctggagccgtgtctgaccatcgatctaatgacagctttctgagcagtgctgctctg
ggcagaggcagcctcagcagcattgcagcaagtgacagtggctcgttcagcagtgctggc
agtgactacggatcatgtgcaagtaccacaagtgatggaggttcatatactaacagtgtc
atcagtgacagtggcagtggcactctttggacaagtgacagtactttctgtagtagtgtt
gcacaaggtgactcttcatatagaagcactggaaacaaatgtaatccctccaggagcaac
tcatctcaggaaacactgtacagaagtaatactacttttgaccaagatgctttgtcagtg
aggaagaaaacgaaaattccattgcgacgttgttcatcactggttatttttcctaggagt
ccttccagtactcctccagcttctccagtaagctcaggtcagctaccacacagaggcacc
tatcaaacatctcataaattaattatttctcctagtgagctggcacagaatgaagatccg
accatttccaagggattcctttcaacagcagtcaatgggcttagactgtctaaaacagtt
tgctcttctggtgaggtcagagacatccgtccgctttatttgaacgcatcattacaggac
aaaagtcaaattttgagtggttctcagcaggcaacttgtgaagtacctgatggcttccca
tgtgtttcagttcatcttacacaaagagcatttgcatcaagcagtgaaatggttaatggc
tcttgcagtccagagttaaatctgaactctggtacaaaataccctcatttaaaactggaa
cgtagcacatctgcatgtctaccctcaaaaacagattcagaatatcagattaatataaat
gaactaggaagaccaaatgcacagatgagcaaaactccccatatttttcaaagaagtgtt
tccttggaaggatcacgtcaaaaagtttcttgctgcttatccagccttaaatacaagtgt
catagtgcaaggacgtctcagttgcacatacagttcaaagctgggaatgaaggaaaaaca
actggtgttaggaaaagatgtggaacctctaaaagggaaatgtctagcactttgtggagg
ccccagaagcctgggtggattatattggaccaaccagaggctgcttggcacccacaacag
nnnnnnnnnnctcctccagtgccttcaggctgggaagaaagacaagacatcctcggcagg
acctactatgtcaatcatgaattcagaagaacacagtggaaaagaccaactgcacaggac
agcgtggctgttgcagacctcggcagtgtgcagctggaggcgcagcacgtgttcactcac
cggcgacagatatccgaggatacggagagcaccgacaacagagattcccctgagagctgg
gaaattataactgaagatgaggcaacaatgtacagcaatcagaatgttcaaatacctctc
tcgcagagcagctgtgatatacagagtcatcttgcagaagaattgagtaacagacttact
acctctggaagtccagctactggccagtcaacagcctgcactaaccattccagcagaaga
ggtagtctgcagacatacagacttgaagagcagcccgcacatccagtgttactgcctact
tcatctgggttacccccaggctgggaagaacgacaagatgaaaaaggaaggtcgtattat
atagatcacaattctagaaccactacctggataaaaccagttgtacagattgctgcggaa
acaagtcaggcatcagctgcacaaagtatttctgtagcaagacagccacaagcaacatca
agtgattcatcacaacagtcttctcagcagcagcctgaaatggagcaaggatttctccct
aaaggctgggaagtccgacatgcacccaatgggagaccgttctttattgaccacaatacc
aaaactacaacatgggaagatccaagactgaaaatttctgctcatccaaggagaaagact
tccctagatccagttgacctgggcccattaccaccagggtgggaagagagaactcacaca
gatggaagaatattcttcataaaccacaatacaaaaagaacacaatgggaggatcctcga
ctgcagaatgtggcaataactggaccagctgtgccttactccagggactataagcggaag
tatgaattcttcagaaagaaattgaagaaacagagtgatattccaaataggtttgaaatg
aaaattcatcgcacaacaatccttgaagattcttacagaagaatcatagctgtaaagaga
gcagatttccttaaagcaagactttggattgaatttgatggtgaaaaaggtttagactat
ggaggagttgccagggaatggttcttccttctctctaaagaaatgtttaatccttattat
ggattgtttgaatattcagctacagataactatactctgcagatcaatccgaactctggg
ctttgcaatgaagatcatctctcttatttcaagtttataggtcgtgtggctggaatggct
gtttaccacggtaaacttttggatgccttttttattcgtcctttttacaagatgatgctc
caaaaaccaataacactacatgatatggagtctgtggatagtgaatattacaattctctg
agatggattcttgaaaatgatccaacagaactggacctcagattcatagttgatgaagaa
ctttttggtcagacccatcaacatgaactgaaaagtggtggatcagaaatagttgtcacc
aacaagaacaagagagactacattcatcttgtaattcagtggagatttgtgagccgagta
cagaaacaaatgacagcctttaaagagggcttttttgaactaataccacaggatctgatt
aaaatttttgatgaaaatgagctagagttattaatgtgtggattgggagatgtggacgtg
gctgattggaaactacacacaaaatacaaaaatggctacaacataaaccatcaagtaata
cagtggttctggaaggcagtcttaatgatggactctgaaaagagaataagattacttcag
tttgttactggcacatcacgtgttcccatgaatgggtttgctgagctgtatggttcaaat
ggaccacaattgttcacagttgaacagtggggtacccctgaaaaactgccaagagctcat
acctgctttaatcgcttggatttgcctccgtatgactcgtttgaagatttatgggataaa
cttcttctagcgattgaaaacactcagggttttgatggggttgattaa
DBGET
integrated database retrieval system
