Geospiza fortis (medium ground-finch): 102042482
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Entry
102042482 CDS
T03755
Symbol
PCDH20
Name
(RefSeq) protocadherin 20
KO
K16498
protocadherin delta 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102042482 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gfr01009
]
102042482 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gfr04515
]
102042482 (PCDH20)
Protein phosphatases and associated proteins [BR:
gfr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102042482 (PCDH20)
Cell adhesion molecules [BR:
gfr04515
]
Cadherins
Protocadherins
102042482 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
102042482
NCBI-ProteinID:
XP_014164774
UniProt:
A0A6I9ZAQ3
LinkDB
All DBs
Position
Un
AA seq
1029 aa
AA seq
DB search
MFGDAQGDAPVWDALVVGRESAAGETGELGAGARGKMARRGASAAGGRGEAGCPRAILAL
RICCGGCSWCCLEGTDGDALEVVAVLGGWWGEGGWLHVADAAAAAPSGSGGGSGRGEAPA
LPHTPVLLSSQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPT
ADSQQAASLQPPLSFTLASHGLGGQYVQLDNRSGELHTSAVEIDREALCMESSGATIFGG
SAAVSSSSPSPESCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIRLSVPENA
PVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFTLDVEENENGERTPYLIVMGALDREM
QDEYVTVIIAEDGGTPPLVGSATLTIGISDINDNCPQFNDSQLNITLYGNSSLGTHVATV
HAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNESTGAITLSTKVGGDTPRLHRLIILGNG
PGCIPAVITVLVTIIKVMMRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTIKDPDEK
YKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDFETQQLYEISVVAWNSEGFHVKKVVK
VQVLDDNDNSPVFSEQLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGPDAPSYF
ALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINK
DFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDR
EQQSSYVLWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGS
PITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLV
KVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISVEEKQPQISIEPTHKKME
SASCMPTLVALSIISLGSIALVTGMGIYICLRKGKKHHRADENLEVQIPLNGRINLHMLE
KKPVEISNI
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggatgcgcaaggggatgccccagtttgggatgcgcttgttgttgggagggaa
agtgccgctggtgagacgggcgagcttggggcgggggcaagagggaaaatggcacgtcgg
ggcgcaagtgctgctggggggcggggggaggcagggtgcccccgggccatcctggcactg
cgtatttgctgtgggggatgcagctggtgttgcctggagggtacagatggtgatgccctg
gaagtagttgctgtactgggaggatggtggggagagggaggatggcttcatgttgcagat
gcagcagcagctgctccaagtggcagtgggggaggcagtgggcggggggaagcgccagcc
ctccctcacacccctgtccttctctcttctcagcacttgctcctcttcctgctcttcgtt
gggcctttcaactgctttgccagttacagccgtgccactgagctcttctacagcctcaac
gaggggctgcctgctggcgtgctcatcggcagcctggcccgtgacctgcggctcccaacg
gctgacagccagcaagctgcatctctgcagcccccactctccttcaccctggcctctcat
ggcttggggggacagtatgtgcagctggacaaccgctccggagagctgcacacctcagca
gtggagatagaccgggaagctctatgcatggaaagcagtggggccaccatcttcggagga
tcggctgctgtctcctcttcctccccctcaccagagtcatgcctactgctgctggatgtg
ctggtactgccacaggagtactttcgcctggtgaaggtaaaaattgctatccgtgatgtc
aacgacaacgctccccgcttccctgtgccccacatccgcctctcggtgcctgagaatgcg
cctgtgaacacccgcctggccatcgagcaccctgcccttgaccctgacatgggcaccaat
ggtgtccagacctaccgcctgcgagataactatggtgtcttcaccctggatgtggaggag
aatgagaatggggagaggactccctacctgattgttatgggggcactggaccgggagatg
caggatgagtatgtgacagtcatcatcgctgaggatggggggactcctccgctcgtgggc
agtgccaccctcactattggcatcagtgacatcaatgacaactgcccccagttcaatgac
tcgcagctcaacatcactctctatgggaattccagcctagggacacacgtggctactgtc
cacgcagtggacatggaccttggatccaatgcccagatcacctactcctacagccagaag
gtcccccagccatccagagacttgttccatctgaatgaaagcacaggagccatcacactc
tccactaaagttggtggggacactccaaggctacacaggctgatcatactgggcaacggt
cctggctgtattcctgccgtgattacagtgctggtgaccatcatcaaggtcatgatgagg
ccccctgaagttgttcctcgtttcatagccaatgaagtggaaggggtggtctacttaaag
gaacttgagcctatcaacacacccatagcattttttaccatcaaagaccccgatgaaaaa
tacaaagtcagttgctatttggatggtgatgggcctttcaggctttcaccgtacaagcca
tacaacaatgagtacctgttggagaccacgaagcctttggactttgagacacagcagctg
tatgaaatctccgtagttgcatggaactctgaaggatttcatgtcaagaaagttgtcaaa
gtacaggttctggatgacaatgacaattcaccagttttctctgaacagctgatagaattg
tccattgaggagaacaatgtccccaatgcttttttgaccaaactgcatgctactgatgct
gacagtggagaaagagggcaagtgtcctatttcttaggtcctgatgcaccttcctatttt
gctttagataaaaccacaggtgttcttacagtttccacccaactggacagagaagaaaaa
gagaaatacagatacactgtcaaagcagtagattctggattccctccaagagaatcaata
gcaactgtcaccatcactgtattggataaaaatgataacagtccaagatttatcaataag
gatttcagcttttttgtgccagaaaactttccaggttttggtgaaattggagttataagt
gtcacagatgctgatgcagggcaaaatggatgggttgccctttcagttctgaatggaagt
gatatttttgttatagatactggaaaaggagttttgagagctaaagtctccctggacagg
gaacagcaaagctcctacgttctgtggattgaagcagttgatggcggtgatcctgctctg
tcttctacagcaaaaataactatccttcttctggacataaatgacaaccctcctttggtc
ttgttccctcagtctaatatgtcttacttgttagtccttccctctacccttcctggctcc
cccatcactgaggtctatgctgtcgataaggacaccggcatgaatgcagtcatagcttac
agtatcataggaaggagaggccctcgacccgagtcgtttaggattgaccccaaaactggt
aatatcaccttggaagagtccctgatgcagaatgactatggcctctatcggctgcttgta
aaagtcagtgatcacggctacccggagcctctccattccacggtcatggtgaaccttttt
gtcaatgacaccgtcagcaatgagagctacatcgagagcttgttaaggaaggagcctgat
atcagcgtagaagaaaagcagccacaaatatccatagagcctacacataaaaaaatggag
tcagcatcctgcatgcctaccttggtagctctttcaataataagcttgggttcaattgct
ttagtaacggggatgggaatttacatttgtctaagaaaagggaaaaagcatcacagagca
gatgaaaacttggaagtacaaatcccattaaatggaagaattaacctgcacatgttggag
aagaaaccagtggagatttctaacatctaa
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integrated database retrieval system
