Geospiza fortis (medium ground-finch): 102042666
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Entry
102042666 CDS
T03755
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102042666
03036 Chromosome and associated proteins [BR:
gfr03036
]
102042666
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102042666
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
102042666
SLIK complex
102042666
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
102042666
NCBI-ProteinID:
XP_014166827
UniProt:
A0A6I9Z9I9
LinkDB
All DBs
Position
Un
AA seq
1156 aa
AA seq
DB search
MSGSESVSGTSSDSESEEDKEKSSCEDSESDYEPENKVKSRKPPSRIEPKSGKKIAGQKK
RQLDSSDNDDYDKRGSRRQATVNVSYKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEK
FMDSRIGRKGATGAATTIYAVEADGDPNTGFEKSKEPGEIQYLIKWKGWSHIHNTWETEE
TLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIA
HSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQTCIDEYFSRNQSKTTPFKDCKI
LKQRPRFVALKKQPSYIGGHDSLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTVQT
ISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEW
MHPQTKRLKFNILLTTYEILLKDKSFLGGLNWVFIGVDEAHRLKNDDSLLYKTLVDFKSN
HRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYASLHKELEPFLLR
RVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELK
KCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRM
LDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASA
DTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKASVEEDILERAKKKMVLDHLV
IQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKEPEGEEEEPQEMDIDEIL
KRAETRENEPGPLTVGDELLSQFKVANFSNMDEDDIEFKPEQNLRNWEEIIPEVQRRRIE
EEERQKELEEIYMLPRMRNCAKQISFNGSEGKHSRRRRYSGSDSDSVSERKRPKKRGRPR
TIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSEIDLRRLGELVHNGC
IKALKDNSCGQERAGGRFGKVKGPTFRISGVQVNAKLVISHEEELAPLHISIPADPEERK
RYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKK
PRQSSCRPVQITSLNY
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggtcagagtcagtatcaggaactagttctgattctgaatcagaggaagataaa
gagaaaagcagttgtgaagacagtgaatctgactatgagccagaaaacaaagtcaaaagc
cggaaacctccaagcagaattgagccaaaaagtggcaaaaagattgcaggacagaaaaag
aggcagcttgattcgtcagacaatgatgactatgataagagaggatctcgtcgccaggca
acagtcaatgttagctacaaagaagctgaagaaaccaagacagattctgatgacttgctg
gaagtttgtggagaagatgtcccacagcctgaagaagatgaatttgaaactatagagaag
tttatggatagtcgaattggccgaaaaggagccactggtgctgcaaccaccatctatgca
gttgaggcagatggtgacccaaatactgggtttgaaaaatcaaaggagccaggagaaata
cagtatcttattaaatggaaaggctggtcacacatccataatacatgggaaactgaggaa
acactgaagcaacaaaatgttaaaggaatgaagaaactggacaactacaaaaaaaaggat
caggaaacaaaacgctggctgaaaaatgcttctccagaagatgtggaatattataactgc
cagcaggaacttacagatgatctacataaacagtatcaaatagtggagaggataattgct
cattcaaatcagaaatcagcagctggttatccagattactattgcaaatggcaaggtctg
ccttactcagaatgtagctgggaagacggtgctctcattgccaaaaaatttcagacatgt
attgatgagtattttagcagaaaccaatccaagactactccatttaaggactgcaagatt
ctaaaacagaggccgaggtttgttgcactaaagaagcaaccatcttatattggaggacat
gacagtttagagttaagagattatcagttaaatggactgaactggcttgcccactcatgg
tgcaaagggaatagttgtattcttgcagatgaaatgggtctgggtaaaacagtacaaaca
atttcttttctgaactacctgtttcacgaacatcaactgtatggacctttcttgctagtc
gtgccactttctaccttgacatcttggcaaagagagattcaaacttgggctcctcagatg
aatgctgtagtttacttgggagatataactagcagaaatatgataaggactcatgaatgg
atgcatccacagaccaagcgattaaaatttaatatacttctaacaacttatgaaattttg
ctgaaggataagtcattccttggtggtctgaattgggtatttataggagttgatgaagct
catcgtttaaaaaatgatgattcccttctgtacaagactttagtagactttaagtctaat
catcgtcttcttattactggaacccctctgcaaaactcccttaaagagctttggtctttg
ctgcacttcatcatgccagaaaagttttcttcctgggaagattttgaagaggagcatggc
aaagggagagagttcggttatgcaagtcttcacaaagaacttgaaccatttttactcaga
agagttaaaaaagatgtagaaaagtctttgcctgctaaggttgaacaaattttgaggatg
gaaatgagtgcattgcagaagcaatattacaagtggattttaaccaggaattataaagcc
ctgagtaaaggttcaaaaggcagtacctcgggctttttgaacattatgatggaactcaag
aagtgctgtaaccattgctacctcattaaaccaccagatgataatgaattctataataaa
caggaagccttacagcatttaatacgtagcagtggaaaactaatccttcttgacaagcta
ctgattcgcctacgagaacgtggcaacagagtactgattttctctcagatggtgaggatg
ctagacatcctagcagagtatttgaagtatcgtcagtttccctttcagagacttgatgga
tcaataaaaggggaattgaggaaacaagccttggatcattttaatgcagaaggctcagag
gacttttgctttttgctgtctaccagagctggaggattaggtataaacttagcatctgct
gacactgtagttatatttgattctgattggaatccacagaatgatctgcaggcacaggct
agagctcataggattggacagaagaaacaggttaatatttatcggctagtcacaaaagca
tcagtagaagaagatattcttgaaagagccaagaaaaagatggtgttagatcacttagta
attcagagaatggacactacagggaaaactgtactacatacaggctctactccctccagc
tcaacaccttttaataaggaagagttatcagcaattttgaagttcggtgctgaggaactt
tttaaagaacctgaaggggaagaagaggagcctcaggaaatggatatagatgaaatcctg
aagagggctgaaactcgagaaaatgaaccaggtccactgactgtaggagatgagttgctt
tcacagttcaaggtggctaacttttcaaatatggatgaagatgacattgagtttaaacca
gaacaaaatttaagaaactgggaagaaatcattccagaagtccagcggcgacgaatagaa
gaggaagaaagacaaaaagaacttgaagaaatatatatgctgccaaggatgagaaactgt
gcaaaacagatcagctttaatggaagtgaagggaaacacagtaggaggagaagatattct
ggatctgatagtgactcagtctcagaaagaaaacgaccaaaaaaacgtggaagaccgcga
actattcctcgagaaaatattaaaggatttagtgatgcagagattaggcggtttataaag
agttacaagaaatttggtggcccacttgaaaggttagatgctatagctagagatgctgag
ctagttgataaatctgagatagaccttagacgtctgggagaacttgtacataatggatgc
attaaggctttaaaggacaattcctgtggccaagaaagagcaggaggtagatttgggaaa
gttaaaggcccaacattccgaatatcaggagtgcaggtgaatgcaaagttagttatttct
catgaagaagagttggcaccattgcacatatccattcctgcagatccagaagaaaggaaa
agatatgtcatcccatgccacaccaaggcagctcattttgatatagactggggtaaggaa
gatgattccaatctgttaataggtatctacgaatatggctatggcagctgggaaatgata
aaaatggatcctgatctcagtttgacacaaaagattttacctgatgacccagataagaaa
ccaaggcaaagcagttgcagacccgtgcagattacctcattaaattactga
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integrated database retrieval system
